Browse Element(s) Details


OsAffx.15706.1.S1_at

Description tigr:9634.m03083
TID=OsAffx.15706.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=uncharacterized Cys-rich domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3291011/11Protein of unknown function, DUF614 containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g32890NANA6+19137332..19143984retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g32900NANA6+19146691..19154394retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g32910OsAffx.15706.1.S1_at11/116+19156241..19157750Protein of unknown function, DUF614 containing protein
LOC_Os06g32920OsAffx.27907.1.S1_at11/116+19159475..19161686hypothetical protein
LOC_Os06g32930Os.23748.1.A1_at4/116+19180368..19181688hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15706.1.S1_at--982--1131Chr06:19157691..19157715 (25 bp)
AGTGCCACGCTTTTTCTGCATATTG
LOC_Os06g32910
OsAffx.15706.1.S1_at--669--4951Chr06:19157674..19157698 (25 bp)
GCATATTGTCTCATATACGTGACTT
LOC_Os06g32910
OsAffx.15706.1.S1_at--903--231Chr06:19157647..19157671 (25 bp)
ATATAGCATTGTGCGGCGTCAACGT
LOC_Os06g32910
OsAffx.15706.1.S1_at--635--8351Chr06:19157633..19157657 (25 bp)
GGCGTCAACGTTGTCGTCGACTCTT
LOC_Os06g32910
OsAffx.15706.1.S1_at--391--1691Chr06:19157605..19157629 (25 bp)
AGCCTCACGAAGACTCTTTGCTATT
LOC_Os06g32910
OsAffx.15706.1.S1_at--318--1411Chr06:19157600..19157619 (20 bp)
AGACTCTTTGCTATTGGCTGCTTGC
LOC_Os06g32910
OsAffx.15706.1.S1_at--499--10691Chr06:19156445..19156469 (25 bp)
TTGCGCCATAGCAGGCATCACCTAC
LOC_Os06g32910
OsAffx.15706.1.S1_at--987--372Chr03:7958902..7958921 (20 bp)
ATCACCTACTGCTGGATGCGGCCGA
NONE
OsAffx.15706.1.S1_at--1130--9011Chr06:19156386..19156410 (25 bp)
TGCACACCATGTACTCTTGGTCCTA
LOC_Os06g32910
OsAffx.15706.1.S1_at--491--7171Chr06:19156305..19156329 (25 bp)
GTCTGCAGCTCTTCTGTGACAGATG
LOC_Os06g32910
OsAffx.15706.1.S1_at--1113--2131Chr06:19156287..19156311 (25 bp)
ACAGATGTTCCCTCAGCCAGATGTA
LOC_Os06g32910
Target Sequence 
AGTGCCACGCTTTTTCTGCATATTGTCTCATATACGTGACTTTGATATAGCATTGTGCGGCGTCAACGTTGTCGTCGACT
CTTCCCAGCCTCACGAAGACTCTTTGCTATTGGCTGCTTGCGCCATAGCAGGCATCACCTACTGCTGGATGCGGCCGAGC
ACGGTGCTCCCAGGCATGCACACCATGTACTCTTGGTCCTACCGCCAGAAGCTCCGCGCCACGTTCGGCATGGCGCCGGA
GCCCTGCGCCGACTGCTGTCTGCAGCTCTTCTGTGACAGATGTTCCCTCAGCCAGATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15706.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis