Browse Element(s) Details


OsAffx.27907.1.S1_at

Description tigr:9634.m03084
TID=OsAffx.27907.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3292011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g32890NANA6+19137332..19143984retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g32900NANA6+19146691..19154394retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g32910OsAffx.15706.1.S1_at11/116+19156241..19157750Protein of unknown function, DUF614 containing protein
LOC_Os06g32920OsAffx.27907.1.S1_at11/116+19159475..19161686hypothetical protein
LOC_Os06g32930Os.23748.1.A1_at4/116+19180368..19181688hypothetical protein
LOC_Os06g32944Os.41074.1.S1_at11/116+19186002..19191373transposon protein, putative, Pong sub-class, expressed
LOC_Os06g32944OsAffx.9060.1.S1_at8/116+19186002..19191373transposon protein, putative, Pong sub-class, expressed
LOC_Os06g32944OsAffx.23696.1.S1_x_at1/116+19186002..19191373transposon protein, putative, Pong sub-class, expressed
LOC_Os06g32944OsAffx.20956.1.S1_at1/116+19186002..19191373transposon protein, putative, Pong sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27907.1.S1_at--1--5051Chr06:19159505..19159529 (25 bp)
GCAGCAGTAACAACGACGAATCCGG
LOC_Os06g32920
OsAffx.27907.1.S1_at--446--2211Chr06:19159514..19159538 (25 bp)
ACAACGACGAATCCGGTGGCGCGCA
LOC_Os06g32920
OsAffx.27907.1.S1_at--130--8211Chr06:19159554..19159578 (25 bp)
GGAAGGCACCCGAGCAGCAGATCCG
LOC_Os06g32920
OsAffx.27907.1.S1_at--490--991Chr06:19159605..19159629 (25 bp)
AGGATGCGCCCAGGCGGCAGATCCA
LOC_Os06g32920
OsAffx.27907.1.S1_at--1123--5432Chr06:19159741..19159765 (25 bp)
GAACCCAAGCGGCAGATCCAGTGGT
LOC_Os06g32920
OsAffx.27907.1.S1_at--173--7391Chr06:19159820..19159844 (25 bp)
GTGAGCAGGCCAGCGGAGTTCCAAC
LOC_Os06g32920
OsAffx.27907.1.S1_at--1003--6051Chr06:19159835..19159859 (25 bp)
GAGTTCCAACGTGGCTTCGGCTACA
LOC_Os06g32920
OsAffx.27907.1.S1_at--309--4911Chr06:19159848..19159872 (25 bp)
GCTTCGGCTACAGGCGGGCAGCAAC
LOC_Os06g32920
OsAffx.27907.1.S1_at--1091--10231Chr06:19160390..19160414 (25 bp)
TTTGGAGTCAAACTGCGCATCGGCT
LOC_Os06g32920
OsAffx.27907.1.S1_at--684--7091Chr06:19160396..19160420 (25 bp)
GTCAAACTGCGCATCGGCTCGATAT
LOC_Os06g32920
OsAffx.27907.1.S1_at--385--9451Chr06:19160409..19160433 (25 bp)
TCGGCTCGATATCATATCGGCTAGA
LOC_Os06g32920
Target Sequence 
GCAGCAGTAACAACGACGAATCCGGTGGCGCGCAGGCGTGCGGGTGGCGGGAAGGCACCCGAGCAGCAGATCCGGCGACA
GGGAGGAGCACGCGGCGGTGAGGATGCGCCCAGGCGGCAGATCCAGCGACGGGGAGGAGCGCAGGCAATTGATCAGGCAG
TGGGAAGGCGCCCGGCGGCACGTATGGTGACGAGGAGGACCGGAGGAGCGCGGGCAGTGGATCCGGCGGCGAGGAGGAAC
CCAAGCGGCAGATCCAGTGGTGGGGAGGAGCACGGATGGGCCAGTGGAGCTTGGGCAACGGGGAGTCTCACGGCGGTGAG
CAGGCCAGCGGAGTTCCAACGTGGCTTCGGCTACAGGCGGGCAGCAACGAGAAGAAGGAAGAAGATCGAAGCGGATTTGG
TGTGGAATCGAGTTGAATTTGGAGTCAAACTGCGCATCGGCTCGATATCATATCGGCTAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27907.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis