Browse Element(s) Details


OsAffx.15712.1.S1_at

Description tigr:9634.m03133
TID=OsAffx.15712.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AL161540 putative protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3342010/11transposase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g33360Os.50576.1.S1_at11/116+19433825..19438090NB-ARC domain containing protein, expressed
LOC_Os06g33360Os.50576.1.S2_at11/116+19433825..19438090NB-ARC domain containing protein, expressed
LOC_Os06g33370Os.10278.1.S1_at11/116+19438053..19440383expressed protein
LOC_Os06g33370OsAffx.4987.1.S1_at3/116+19438053..19440383expressed protein
LOC_Os06g33370Os.49603.1.S1_at1/116+19438053..19440383expressed protein
LOC_Os06g33380OsAffx.15711.1.S1_at11/116+19442466..19442869hypothetical protein
LOC_Os06g33390OsAffx.27913.1.S1_at11/116+19444693..19445286expressed protein
LOC_Os06g33400OsAffx.27914.1.S1_at11/116+19447322..19447750hypothetical protein
LOC_Os06g33410OsAffx.27915.1.S1_at8/116+19453210..19454390hypothetical protein
LOC_Os06g33420OsAffx.15712.1.S1_at10/116+19456390..19459812transposase, putative
LOC_Os06g33430NANA6+19466522..19472679retrotransposon protein, putative, unclassified
LOC_Os06g33440OsAffx.19542.3.S1_x_at7/116+19479341..19480863retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15712.1.S1_at--1140--5291Chr06:19458237..19458261 (25 bp)
GAAGGCTTGCAAGACGCTGATACAA
LOC_Os06g33420
OsAffx.15712.1.S1_at--79--351Chr06:19458208..19458232 (25 bp)
ATAAACACATTGTATGGCAGCCATG
LOC_Os06g33420
OsAffx.15712.1.S1_at--884--771Chr06:19458186..19458210 (25 bp)
ATGTGCAACGCATGCCATCAACTTA
LOC_Os06g33420
OsAffx.15712.1.S1_at--363--8031Chr06:19458145..19458169 (25 bp)
GGAGTTTGTCTCCAGTTGACCAAGT
LOC_Os06g33420
OsAffx.15712.1.S1_at--620--5851Chr06:19458128..19458152 (25 bp)
GACCAAGTGGTCTCTAGTGCCAAAA
LOC_Os06g33420
OsAffx.15712.1.S1_at--936--6491Chr06:19458102..19458126 (25 bp)
GATATCCATGTTTTTCTGTAACCAT
LOC_Os06g33420
OsAffx.15712.1.S1_at--537--8931Chr06:19457363..19457387 (25 bp)
TGACGCATCACAAGAGGAGAAGCCT
LOC_Os06g33420
OsAffx.15712.1.S1_at--236--11Chr06:19457311..19457335 (25 bp)
ACGAGTTTGCTTGACACGGGTTTCA
LOC_Os06g33420
OsAffx.15712.1.S1_at--460--6831NONE
GTTTCATGCGTGCAGGTACCAGGTT
NONE
OsAffx.15712.1.S1_at--222--1031Chr06:19456492..19456516 (25 bp)
AGGTACCAGGTTCCTTGATGAGCCT
LOC_Os06g33420
OsAffx.15712.1.S1_at--143--691Chr06:19456475..19456499 (25 bp)
ATGAGCCTAACCATGCATGTGCCAA
LOC_Os06g33420
Target Sequence 
GAAGGCTTGCAAGACGCTGATACAAGAACATAAACACATTGTATGGCAGCCATGTGCAACGCATGCCATCAACTTAATGT
TAAAGGACACTGGGAGTTTGTCTCCAGTTGACCAAGTGGTCTCTAGTGCCAAAAAGATATCCATGTTTTTCTGTAACCAT
AATAGATTTCTGCCAAGAATTTTAAAGGCGAGACAAGAGCTTGAGAGTCAATTTGGTGACGCATCACAAGAGGAGAAGCC
TGTATTGGAGAAGATCAATACAAGGATAACGAGTTTGCTTGACACGGGTTTCATGCGTGCAGGTACCAGGTTCCTTGATG
AGCCTAACCATGCATGTGCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15712.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis