Browse Element(s) Details


OsAffx.15723.1.S1_at

Description tigr:9634.m03214
TID=OsAffx.15723.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3416011/11hypothetical protein
LOC_Os01g484901/11retrotransposon protein, putative, unclassified
LOC_Os12g202201/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g213001/11expressed protein
LOC_Os12g258501/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34129NANA6+19879521..19880064NA
LOC_Os06g34140OsAffx.22699.1.S1_x_at1/116+19884352..19891327retrotransposon protein, putative, unclassified
LOC_Os06g34140OsAffx.8201.1.S1_x_at1/116+19884352..19891327retrotransposon protein, putative, unclassified
LOC_Os06g34140OsAffx.18275.1.S1_x_at1/116+19884352..19891327retrotransposon protein, putative, unclassified
LOC_Os06g34150NANA6+19891660..19894846hypothetical protein
LOC_Os06g34160OsAffx.15723.1.S1_at11/116+19896278..19897437hypothetical protein
LOC_Os06g34169NANA6+19900499..19900677NA
LOC_Os06g34180NANA6+19903209..19903553hypothetical protein
LOC_Os06g34190OsAffx.15725.1.S1_at11/116+19907065..19907945hypothetical protein
LOC_Os06g34200OsAffx.15726.1.S1_at11/116+19921057..19922261hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15723.1.S1_at--814--14340Chr12:12792620..12792821 (25 bp)
AGAACTATATATTGGATCAAATCAA
NONE
OsAffx.15723.1.S1_at--975--9591Chr06:19896605..19896649 (25 bp)
TCATCAACAGATTTCCAAAAGCTCG
LOC_Os06g34160
OsAffx.15723.1.S1_at--821--3551Chr06:19896606..19896650 (25 bp)
CATCAACAGATTTCCAAAAGCTCGG
LOC_Os06g34160
OsAffx.15723.1.S1_at--832--371Chr06:19896607..19896651 (25 bp)
ATCAACAGATTTCCAAAAGCTCGGC
LOC_Os06g34160
OsAffx.15723.1.S1_at--60--9711Chr06:19896608..19896652 (25 bp)
TCAACAGATTTCCAAAAGCTCGGCG
LOC_Os06g34160
OsAffx.15723.1.S1_at--186--2351Chr06:19896642..19896666 (25 bp)
AAAGCTCGGCGGGAATTTTGATGTT
LOC_Os06g34160
OsAffx.15723.1.S1_at--895--2691Chr06:19896643..19896667 (25 bp)
AAGCTCGGCGGGAATTTTGATGTTG
LOC_Os06g34160
OsAffx.15723.1.S1_at--24--3791Chr06:19896646..19896670 (25 bp)
CTCGGCGGGAATTTTGATGTTGGAC
LOC_Os06g34160
OsAffx.15723.1.S1_at--781--9151Chr06:19896647..19896671 (25 bp)
TCGGCGGGAATTTTGATGTTGGACC
LOC_Os06g34160
OsAffx.15723.1.S1_at--1027--3912Chr07:12531870..12531889 (20 bp)
CGGCGGGAATTTTGATGTTGGACCA
NONE
OsAffx.15723.1.S1_at--475--7712Chr07:12531870..12531890 (21 bp)
GGCGGGAATTTTGATGTTGGACCAA
NONE
Target Sequence 
AGAACTATATATTGGATCAAATCAATTGGCACGCTAACACACCCGAAGGCGAGCTTTGGACCTGCACTGGAGTTAAGCAA
ATCTCCCAGGCCTTGTGTTTTTCATCAACAGATTTCCAAAAGCTCGGCGGGAATTTTGATGTTGGACCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15723.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis