Browse Element(s) Details


OsAffx.15725.1.S1_at

Description tigr:9634.m03217
TID=OsAffx.15725.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3419011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34140OsAffx.22699.1.S1_x_at1/116+19884352..19891327retrotransposon protein, putative, unclassified
LOC_Os06g34140OsAffx.8201.1.S1_x_at1/116+19884352..19891327retrotransposon protein, putative, unclassified
LOC_Os06g34140OsAffx.18275.1.S1_x_at1/116+19884352..19891327retrotransposon protein, putative, unclassified
LOC_Os06g34150NANA6+19891660..19894846hypothetical protein
LOC_Os06g34160OsAffx.15723.1.S1_at11/116+19896278..19897437hypothetical protein
LOC_Os06g34169NANA6+19900499..19900677NA
LOC_Os06g34180NANA6+19903209..19903553hypothetical protein
LOC_Os06g34190OsAffx.15725.1.S1_at11/116+19907065..19907945hypothetical protein
LOC_Os06g34200OsAffx.15726.1.S1_at11/116+19921057..19922261hypothetical protein
LOC_Os06g34210NANA6+19925941..19926312hypothetical protein
LOC_Os06g34220NANA6+19926820..19927721retrotransposon protein, putative, unclassified
LOC_Os06g34230OsAffx.19678.3.A1_at2/116+19930579..19931079hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15725.1.S1_at--659--4811Chr06:19907801..19907825 (25 bp)
GCTCAAGCATGCACCGAAAACCATA
LOC_Os06g34190
OsAffx.15725.1.S1_at--958--2411Chr06:19907785..19907809 (25 bp)
AAAACCATACGGCTGCAAGGGCGGT
LOC_Os06g34190
OsAffx.15725.1.S1_at--670--5911Chr06:19907666..19907690 (25 bp)
GAGCTAGCGCGCCTCATTGAGGTCT
LOC_Os06g34190
OsAffx.15725.1.S1_at--287--1491Chr06:19907474..19907494 (21 bp)
AGCACTCCCGTGCAATTGAAAGGAT
LOC_Os06g34190
OsAffx.15725.1.S1_at--708--1311Chr06:19907439..19907463 (25 bp)
AGATGTGGCGCCTCTGTGCTAGATC
LOC_Os06g34190
OsAffx.15725.1.S1_at--916--5891Chr06:19907357..19907381 (25 bp)
GAGCTGCCACTTTTGGGTCCTGTGA
LOC_Os06g34190
OsAffx.15725.1.S1_at--632--3251Chr06:19907332..19907356 (25 bp)
CAACGACGCAGTGGCTAGTGGCATC
LOC_Os06g34190
OsAffx.15725.1.S1_at--344--2191Chr06:19907287..19907311 (25 bp)
ACACATAGATTGGTGCCTGGCGGGC
LOC_Os06g34190
OsAffx.15725.1.S1_at--1111--8571Chr06:19907260..19907284 (25 bp)
TGGTTCCTTGCCCTATAGCGAGGCT
LOC_Os06g34190
OsAffx.15725.1.S1_at--111--291Chr06:19907219..19907243 (25 bp)
ATAGGTGGTGCTGCCATATAGGTCG
LOC_Os06g34190
OsAffx.15725.1.S1_at--50--6231Chr06:19907120..19907144 (25 bp)
GAGGCCCCTTTGGTACCTTGAGGAG
LOC_Os06g34190
Target Sequence 
GCTCAAGCATGCACCGAAAACCATACGGCTGCAAGGGCGGTGGCAGCGGGGCCTTCCCCCCTCTCCATGGAGGCCTCGGA
GGTCCGAGCCCACGACCAGTACCAAGACGATAGAGGCCACAATGGGGGCAGGCTAGAGCTAGCGCGCCTCATTGAGGTCT
GGCCCCAGCACTCCCGTGCAATTGAAAGGATGGATGTGGCTAGATGTGGCGCCTCTGTGCTAGATCTGGCTAGAGAGCGG
CCATGTGGGTCTGTGGGGCCGTGTGCTATGGGGCAGCTCGGTGGAGCTGCCACTTTTGGGTCCTGTGACAACGACGCAGT
GGCTAGTGGCATCGACGGCGAGCAGGGGCACTCACACATAGATTGGTGCCTGGCGGGCGGTGGTTCCTTGCCCTATAGCG
AGGCTCTCGATGTCATGGGGCATAGGTGGTGCTGCCATATAGGTCGGAGGCTGGCTGCGGGGGCGTTGGTATTGCAGGGG
TTACGGCGGAGGGGCATCGGCGCAATGGCAGTAGGAGTGGGAGGCCCCTTTGGTACCTTGAGGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15725.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis