Browse Element(s) Details


OsAffx.15726.1.S1_at

Description tigr:9634.m03218
TID=OsAffx.15726.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3420011/11hypothetical protein
LOC_Os06g090101/11hypothetical protein
LOC_Os04g162801/11transposon protein, putative, unclassified
LOC_Os07g275201/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g34160OsAffx.15723.1.S1_at11/116+19896278..19897437hypothetical protein
LOC_Os06g34169NANA6+19900499..19900677NA
LOC_Os06g34180NANA6+19903209..19903553hypothetical protein
LOC_Os06g34190OsAffx.15725.1.S1_at11/116+19907065..19907945hypothetical protein
LOC_Os06g34200OsAffx.15726.1.S1_at11/116+19921057..19922261hypothetical protein
LOC_Os06g34210NANA6+19925941..19926312hypothetical protein
LOC_Os06g34220NANA6+19926820..19927721retrotransposon protein, putative, unclassified
LOC_Os06g34230OsAffx.19678.3.A1_at2/116+19930579..19931079hypothetical protein
LOC_Os06g34240OsAffx.435.1.S1_at1/116+19934521..19937636retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g34250NANA6+19938090..19939931hypothetical protein
LOC_Os06g34260OsAffx.27926.1.S1_at11/116+19941281..19942503hypothetical protein
LOC_Os06g34270OsAffx.4998.1.S1_at11/116+19947202..19949049hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15726.1.S1_at--675--36110Chr12:12170018..12170042 (25 bp)
CTTGGTGCTCAAGGATCTACCAGTA
NONE
OsAffx.15726.1.S1_at--621--6911Chr06:19921589..19921613 (25 bp)
GTATGACTTCAGGACTTCCCAACAA
LOC_Os06g34200
OsAffx.15726.1.S1_at--688--4331Chr06:19921559..19921583 (25 bp)
CCATCGCCAGCGTCAATCAAGGAGT
LOC_Os06g34200
OsAffx.15726.1.S1_at--986--151Chr06:19921494..19921518 (25 bp)
ATTATCTTTCCGGTCTACACCATTA
LOC_Os06g34200
OsAffx.15726.1.S1_at--797--3932Chr07:5344738..5344758 (21 bp)
CGGCTGGCCCAATCATTATCGGGAA
NONE
OsAffx.15726.1.S1_at--451--7991Chr06:19921340..19921364 (25 bp)
GGAGGAACCCTCAGGCGGCTGAATT
LOC_Os06g34200
OsAffx.15726.1.S1_at--892--8332Chr04:8825993..8826017 (25 bp)
GGCTGAATTTCACCTTCCATGTGAA
LOC_Os04g16280
OsAffx.15726.1.S1_at--642--9791Chr06:19921243..19921267 (25 bp)
TAAGACAACCAAGCACACTCTCGAG
LOC_Os06g34200
OsAffx.15726.1.S1_at--861--8171Chr06:19921171..19921195 (25 bp)
GGAACGAGGAATCCAGCGCACTTCA
LOC_Os06g34200
OsAffx.15726.1.S1_at--207--7611Chr06:19921141..19921165 (25 bp)
GGGAACTACTTACTGTCCGATCCAC
LOC_Os06g34200
OsAffx.15726.1.S1_at--935--2691Chr06:19921109..19921133 (25 bp)
AAGCTCATGATCTCACAAACTGCAG
LOC_Os06g34200
Target Sequence 
CTTGGTGCTCAAGGATCTACCAGTATGACTTCAGGACTTCCCAACAACAGTCCCATCGCCAGCGTCAATCAAGGAGTTTC
TACCTCGACACCGCTGGTGTGGACTCAAGTCGGATCTATTATCTTTCCGGTCTACACCATTACACCAATCTCGGCTGGCC
CAATCATTATCGGGAACGAGAGAGGTACAGCGACGGCTAAGAGAAACGATGCCCCGCCGACAATTCCTCCCACTCAGGTG
GAGAACGGAACATCGACAGTCCCAACACCAGGGAGGAACCCTCAGGCGGCTGAATTTCACCTTCCATGTGAAAGATCAAA
GCCGACAAGGATAACCACCCTAAAACCGAGAACTTGGTGTCCTGTGCATAAGACAACCAAGCACACTCTCGAGGACTACC
CGGTGATACTCCACGTGCAAGCTGAACTCTACGCCTGTTGGGAACGAGGAATCCAGCGCACTTCACCAACGGGAACTACT
TACTGTCCGATCCACAGATTTAAAGCTCATGATCTCACAAACTGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15726.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis