CREP Browser

OsAffx.15756.1.S1_at

Description

tigr:9634.m03339
TID=OsAffx.15756.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g35290	11/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g35230	NA	NA	6	+	20552375..20552868	hypothetical protein
LOC_Os06g35240	OsAffx.27948.1.S1_at	11/11	6	+	20554175..20554507	hypothetical protein
LOC_Os06g35250	OsAffx.22699.1.S1_x_at	2/11	6	+	20554648..20557647	retrotransposon protein, putative, unclassified
LOC_Os06g35260	NA	NA	6	+	20558050..20559937	retrotransposon protein, putative, unclassified
LOC_Os06g35270	NA	NA	6	+	20560507..20563444	hypothetical protein
LOC_Os06g35280	NA	NA	6	+	20573706..20575023	retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35290	OsAffx.15756.1.S1_at	11/11	6	+	20577773..20578270	hypothetical protein
LOC_Os06g35300	Os.7500.1.S1_at	2/11	6	+	20580983..20582061	Exopolygalacturonase precursor, putative
LOC_Os06g35310	NA	NA	6	+	20583401..20584652	hypothetical protein
LOC_Os06g35320	Os.7500.1.S1_at	11/11	6	+	20590833..20592494	Exopolygalacturonase precursor, putative, expressed
LOC_Os06g35330	NA	NA	6	+	20598827..20599608	hypothetical protein
LOC_Os06g35340	NA	NA	6	+	20600613..20602345	hypothetical protein

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Gene Ontology Classification

GO id	Type	Name
NONE	NONE	NONE

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15756.1.S1_at--750--391	2	Chr10:9456749..9456826 (25 bp)	CGGCGACGACAAACGATGACACAAC	NONE
OsAffx.15756.1.S1_at--775--409	1	Chr06:20577816..20577840 (25 bp)	CGACAAACGATGACACAACGGTGGA	LOC_Os06g35290
OsAffx.15756.1.S1_at--851--631	2	Chr06:20577824..20577848 (25 bp)	GATGACACAACGGTGGAAAGCGAGA	LOC_Os06g35290
OsAffx.15756.1.S1_at--991--267	3	Chr06:20577841..20577865 (25 bp)	AAGCGAGAGCACTAAAGCGAAGAGT	LOC_Os06g35290
OsAffx.15756.1.S1_at--56--535	1	Chr06:20577859..20577883 (25 bp)	GAAGAGTAGAACAAGACCGTCCTTA	LOC_Os06g35290
OsAffx.15756.1.S1_at--483--437	1	Chr06:20577885..20577909 (25 bp)	CCACACTTACACGACGACGATCGAC	LOC_Os06g35290
OsAffx.15756.1.S1_at--694--405	1	Chr06:20577902..20577926 (25 bp)	CGATCGACGATGAACGGCAGCCGGC	LOC_Os06g35290
OsAffx.15756.1.S1_at--18--51	1	Chr06:20577950..20577974 (25 bp)	ATCGGGACGACTGTGACGGCAGCTT	LOC_Os06g35290
OsAffx.15756.1.S1_at--449--763	1	Chr06:20577953..20577977 (25 bp)	GGGACGACTGTGACGGCAGCTTTAC	LOC_Os06g35290
OsAffx.15756.1.S1_at--347--869	1	Chr06:20577961..20577985 (25 bp)	TGTGACGGCAGCTTTACGGCGAACA	LOC_Os06g35290
OsAffx.15756.1.S1_at--989--573	1	Chr06:20577964..20577988 (25 bp)	GACGGCAGCTTTACGGCGAACACCG	LOC_Os06g35290

Target Sequence

CGGCGACGACAAACGATGACACAACGGTGGAAAGCGAGAGCACTAAAGCGAAGAGTAGAACAAGACCGTCCTTACCCACA
CTTACACGACGACGATCGACGATGAACGGCAGCCGGCGACGAGCTTCGAGCAGCGGCGAGATCGGGACGACTGTGACGGC
AGCTTTACGGCGAACACCG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis

Browse Element(s) Details