Browse Element(s) Details


Os.7500.1.S1_at

Description gb:AK072748.1
DB_XREF= gi:32982771
TID=Os.7500.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7500 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023140O11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023140O11, full insert sequence.
FL= gb:AK072748.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3532011/11Exopolygalacturonase precursor, putative, expressed
LOC_Os06g353704/11Exopolygalacturonase precursor, putative
LOC_Os06g353002/11Exopolygalacturonase precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g35280NANA6+20573706..20575023retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g35290OsAffx.15756.1.S1_at11/116+20577773..20578270hypothetical protein
LOC_Os06g35300Os.7500.1.S1_at2/116+20580983..20582061Exopolygalacturonase precursor, putative
LOC_Os06g35310NANA6+20583401..20584652hypothetical protein
LOC_Os06g35320Os.7500.1.S1_at11/116+20590833..20592494Exopolygalacturonase precursor, putative, expressed
LOC_Os06g35330NANA6+20598827..20599608hypothetical protein
LOC_Os06g35340NANA6+20600613..20602345hypothetical protein
LOC_Os06g35350Os.39476.1.S1_at4/116+20611753..20613962transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g35350OsAffx.8455.1.S1_at1/116+20611753..20613962transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g35360OsAffx.8589.1.S1_at1/116+20616043..20619276transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005975biological_processcarbohydrate metabolism
GO:0004650molecular_functionpolygalacturonase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7500.1.S1_at--562--4452Chr06:20620762..20620786 (25 bp)
GCCTCCAAGTTTACCTACGAGAACA
LOC_Os06g35370
Os.7500.1.S1_at--954--8553Chr06:20620731..20620755 (25 bp)
TGGAGGACGTTGCTAACCCCATCAT
LOC_Os06g35370
Os.7500.1.S1_at--1088--2214Chr05:28160563..28160592 (24 bp)
ACAAGATCTGCACTGCCAACGGCAA
NONE
Os.7500.1.S1_at--309--7792Chr06:20620532..20620556 (25 bp)
GGTCGAGTACTCTGGCACAAACAAC
LOC_Os06g35370
Os.7500.1.S1_at--715--3192Chr06:20620457..20620481 (25 bp)
CAAGGAGCTTTCGTGCTTCTAAACG
NONE
Os.7500.1.S1_at--917--9532Chr06:20620386..20620410 (25 bp)
TCTATTTCTATTTTCCAGGTCACTT
NONE
Os.7500.1.S1_at--440--7092Chr06:20620368..20620392 (25 bp)
GTCACTTATAGTTTTTCTCTGGCGA
NONE
Os.7500.1.S1_at--340--10592Chr06:20620354..20620378 (25 bp)
TTCTCTGGCGATGCTCTGATTGGAT
NONE
Os.7500.1.S1_at--1117--9432Chr06:20620316..20620340 (25 bp)
TCGGACTATCCGACTGCTCTATAGT
NONE
Os.7500.1.S1_at--34--5712Chr06:20620269..20620293 (25 bp)
GACTATCCAGTTAGTTCTAAGCTGT
NONE
Os.7500.1.S1_at--378--3692Chr06:20620215..20620239 (25 bp)
CTATTCATCCCTCTAGGTGACATAT
NONE
Target Sequence 
GCCTCCAAGTTTACCTACGAGAACATCAAGATGGAGGACGTTGCTAACCCCATCATCANTCGNACATGANAGTNACTGCC
CCNACAAGATCTGCACTGCCAACGGCAACTCCAAGGTCACCATCAAGGACATCACCTTCAAGAACATCACCGGCACCTCC
TCCACGCCCGAGGCCGTTAGCCTCCTCTGCTCCGACAAGCTGCCGTGCACCGGCGTCACCTTGAATGACATCAAGGTCGA
GTACTCTGGCACAAACAACAAGACCATGGCCGTCTGCAAGAATGCCAAGGGCACTGCCACCGGCTGCCTCAAGGAGCTTT
CGTGCTTCTAAACGATCAACCCACGCTACATCCTGCCACCACCACCATTATTTTTTCATTTCTATTTCTATTTTCCAGGT
CACTTATAGTTTTTCTCTGGCGATGCTCTGATTGGATTGTTCTGATGCNGTCGGACTATCCGACTGCTCTATAGTCAGAT
TGTCTGCAGTGGTACCNGACTATCCAGTTAGTTCTAAGCTGTTTGTAAGTTTAAGAAATTTTTGGAAATACCTATTCATC
CCTCTAGGTGACATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7500.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis