Browse Element(s) Details


OsAffx.15770.1.S1_at

Description tigr:9634.m03418
TID=OsAffx.15770.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3607011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36050Os.5208.1.S1_at11/116+21065265..21068929expressed protein
LOC_Os06g36060NANA6+21072819..21078104hypothetical protein
LOC_Os06g36070OsAffx.15770.1.S1_at11/116+21088971..21090313expressed protein
LOC_Os06g36080OsAffx.27959.1.S1_x_at11/116+21102639..21111734Kinesin motor domain containing protein, expressed
LOC_Os06g36080Os.19335.1.S1_at11/116+21102639..21111734Kinesin motor domain containing protein, expressed
LOC_Os06g36080OsAffx.27303.1.S1_at1/116+21102639..21111734Kinesin motor domain containing protein, expressed
LOC_Os06g36090Os.15456.1.S1_at11/116+21112237..21119651ABC transporter family protein, putative, expressed
LOC_Os06g36090Os.15456.2.S1_x_at4/116+21112237..21119651ABC transporter family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15770.1.S1_at--625--1771Chr06:21089328..21089352 (25 bp)
ACCGGCGATGCATGCGTGTCAATTT
LOC_Os06g36070
OsAffx.15770.1.S1_at--894--611Chr06:21089317..21089341 (25 bp)
ATGCGTGTCAATTTGCACAACTTTT
LOC_Os06g36070
OsAffx.15770.1.S1_at--563--2191Chr06:21089301..21089325 (25 bp)
ACAACTTTTTGTGCCTTAGTGTGAA
LOC_Os06g36070
OsAffx.15770.1.S1_at--246--7331Chr06:21089274..21089298 (25 bp)
GTGCATGTAGCCACGTAGTACGTAC
LOC_Os06g36070
OsAffx.15770.1.S1_at--904--1351Chr06:21089203..21089227 (25 bp)
AGAGAAGTGTCCACTGCACTGCAAT
LOC_Os06g36070
OsAffx.15770.1.S1_at--798--5091Chr06:21089188..21089212 (25 bp)
GCACTGCAATAGTTTTCCTCTTAAG
LOC_Os06g36070
OsAffx.15770.1.S1_at--482--6051Chr06:21089157..21089181 (25 bp)
GAGATTTTGCATGCTTAGAATCCAT
LOC_Os06g36070
OsAffx.15770.1.S1_at--748--6871Chr06:21089067..21089091 (25 bp)
GTATTAGCCTAGGTAGTAGCTGCTA
LOC_Os06g36070
OsAffx.15770.1.S1_at--1136--1591Chr06:21089050..21089074 (25 bp)
AGCTGCTAGTACTGTGCAATCTTGC
LOC_Os06g36070
OsAffx.15770.1.S1_at--821--5191Chr06:21089035..21089059 (25 bp)
GCAATCTTGCCTAGCTTGTTTATGT
LOC_Os06g36070
OsAffx.15770.1.S1_at--875--6591Chr06:21089009..21089033 (25 bp)
GATTGATCAAGCTTGTGTGCAAATA
LOC_Os06g36070
Target Sequence 
ACCGGCGATGCATGCGTGTCAATTTGCACAACTTTTTGTGCCTTAGTGTGAAGTGTGCATGTAGCCACGTAGTACGTACT
AGTATATATGTGTTTGTATATGTACATGGATGAAGCATGTTTTGTAGAGAAGTGTCCACTGCACTGCAATAGTTTTCCTC
TTAAGAGCTGAGAGATTTTGCATGCTTAGAATCCATGCATATATGTATATGCACTATATTAATAAATCTAGAATTAATAG
TACTTATTATATACTAGTACTGTATTAGCCTAGGTAGTAGCTGCTAGTACTGTGCAATCTTGCCTAGCTTGTTTATGTTG
ATTGATCAAGCTTGTGTGCAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15770.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis