Browse Element(s) Details


Os.19335.1.S1_at

Description gb:AK064200.1
DB_XREF= gi:32974218
TID=Os.19335.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.19335 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-104-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-104-D10, full insert sequence.
FL= gb:AK064200.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3608011/11Kinesin motor domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g36060NANA6+21072819..21078104hypothetical protein
LOC_Os06g36070OsAffx.15770.1.S1_at11/116+21088971..21090313expressed protein
LOC_Os06g36080OsAffx.27959.1.S1_x_at11/116+21102639..21111734Kinesin motor domain containing protein, expressed
LOC_Os06g36080Os.19335.1.S1_at11/116+21102639..21111734Kinesin motor domain containing protein, expressed
LOC_Os06g36080OsAffx.27303.1.S1_at1/116+21102639..21111734Kinesin motor domain containing protein, expressed
LOC_Os06g36090Os.15456.1.S1_at11/116+21112237..21119651ABC transporter family protein, putative, expressed
LOC_Os06g36090Os.15456.2.S1_x_at4/116+21112237..21119651ABC transporter family protein, putative, expressed
LOC_Os06g36099NANA6+21128367..21128976NA
LOC_Os06g36110OsAffx.20733.1.A1_x_at1/116+21136513..21141892retrotransposon protein, putative, Ty3-gypsy subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0003777molecular_functionmicrotubule motor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19335.1.S1_at--950--6391Chr06:21109931..21110202 (25 bp)
GATCGGTTGCATAAGGTGGCCACTC
LOC_Os06g36080
Os.19335.1.S1_at--1009--351Chr06:21110188..21110212 (25 bp)
ATAAGGTGGCCACTCGAGCATCGAG
LOC_Os06g36080
Os.19335.1.S1_at--1053--2891Chr06:21111408..21111432 (25 bp)
AAGGTCAGAGTAACACAGGCAACAT
LOC_Os06g36080
Os.19335.1.S1_at--775--2891Chr06:21111461..21111485 (25 bp)
AAGGTGGACGTAAAAGCTGTGCATC
LOC_Os06g36080
Os.19335.1.S1_at--190--2691Chr06:21111474..21111498 (25 bp)
AAGCTGTGCATCCTTGACGAACATC
LOC_Os06g36080
Os.19335.1.S1_at--750--5791Chr06:21111489..21111513 (25 bp)
GACGAACATCTTGCAACATTGGTAT
LOC_Os06g36080
Os.19335.1.S1_at--1030--8571Chr06:21111508..21111532 (25 bp)
TGGTATAACCTTTTTGTACATTACA
LOC_Os06g36080
Os.19335.1.S1_at--87--2031Chr06:21111567..21111591 (25 bp)
ACTACTCATTGATTCTGCACTCTGG
LOC_Os06g36080
Os.19335.1.S1_at--265--8831Chr06:21111576..21111600 (25 bp)
TGATTCTGCACTCTGGTTTTCTTTC
LOC_Os06g36080
Os.19335.1.S1_at--549--51Chr06:21111634..21111658 (25 bp)
ATTGTTCCCTGTAAATGCTCTTGTA
LOC_Os06g36080
Os.19335.1.S1_at--74--2291Chr06:21111646..21111670 (25 bp)
AAATGCTCTTGTACATATGCTATGT
LOC_Os06g36080
Target Sequence 
GATCGGTTGCATAAGGTGGCCACTCGAGCATCGAGGACAACTACACCAAAAACACCACAATCGCCTACNTTGTGGCCTAA
ACTAAGNGATCCACCTCCTCCTAGATCTCCAATNTCTACAAGCACAGGAAAGGTCAGAGTAACACAGGCAACATCTTCAT
CAAGAAATTCCAGTACTCAGAAAAGGTGGACGTAAAAGCTGTGCATCCTTGACGAACATCTTGCAACATTGGTATAACCT
TTTTGTACATTACATCTAGAAAAGCATTTGTTTTGTTATTTAATAGANACTACTCATTGATTCTGCACTCTGGTTTTCTT
TCACAATTGAAGAACTGCAAAACCAGTTGGAATAGATTGTTCCCTGTAAATGCTCTTGTACATATGCTATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19335.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis