Browse Element(s) Details


OsAffx.15930.1.S1_at

Description tigr:9634.m04348
TID=OsAffx.15930.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to SBP-domain protein 3
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4486011/11SBP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44840OsAffx.15929.2.S1_s_at11/116+27086520..27091920prenyltransferase, UbiA family protein, expressed
LOC_Os06g44840Os.13534.1.S1_at11/116+27086520..27091920prenyltransferase, UbiA family protein, expressed
LOC_Os06g44840OsAffx.15929.1.S1_at10/116+27086520..27091920prenyltransferase, UbiA family protein, expressed
LOC_Os06g44840Os.13534.1.S1_s_at10/116+27086520..27091920prenyltransferase, UbiA family protein, expressed
LOC_Os06g44849NANA6+27101096..27101387NA
LOC_Os06g44860OsAffx.15930.1.S1_at11/116+27113989..27115985SBP domain containing protein, expressed
LOC_Os06g44860Os.45980.1.S1_s_at1/116+27113989..27115985SBP domain containing protein, expressed
LOC_Os06g44870OsAffx.15931.1.S1_s_at11/116+27122728..27123655hypothetical protein
LOC_Os06g44880OsAffx.28109.1.S1_x_at10/116+27125263..27129159Type II intron maturase family protein
LOC_Os06g44890Os.14309.1.S1_at11/116+27134558..27143860Villin-4, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009554biological_processmegasporogenesis
GO:0009556biological_processmicrosporogenesis
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15930.1.S1_at--1148--6811Chr06:27115228..27115252 (25 bp)
GTTTCACGTGCTCACGGAGTTTGAT
LOC_Os06g44860
OsAffx.15930.1.S1_at--807--2671Chr06:27115274..27115298 (25 bp)
AAGCGGCTGGCGGAGCACAACCGTC
LOC_Os06g44860
OsAffx.15930.1.S1_at--272--4371Chr06:27115401..27115425 (25 bp)
CCACGTCTTACACCGGTGACAACAA
LOC_Os06g44860
OsAffx.15930.1.S1_at--1131--2571Chr06:27115585..27115608 (24 bp)
AACGTGGTGTCCATGAGCGCGGCCA
LOC_Os06g44860
OsAffx.15930.1.S1_at--93--691Chr06:27115596..27115620 (25 bp)
ATGAGCGCGGCCAAGTCGCCCATCT
LOC_Os06g44860
OsAffx.15930.1.S1_at--27--2491Chr06:27115626..27115650 (25 bp)
AACACCAGCGTGATCAGCTGCCTGC
LOC_Os06g44860
OsAffx.15930.1.S1_at--312--1051Chr06:27115789..27115813 (25 bp)
AGGTGAGCTCCCTGGTCCACATCAA
LOC_Os06g44860
OsAffx.15930.1.S1_at--1162--4671Chr06:27115828..27115852 (25 bp)
GCGGTAGCAACAACATCTTGTCGTG
LOC_Os06g44860
OsAffx.15930.1.S1_at--1160--9091Chr06:27115851..27115875 (25 bp)
TGCTCGTCGGTGTGCTCCAGCGCGC
LOC_Os06g44860
OsAffx.15930.1.S1_at--981--5851Chr06:27115889..27115913 (25 bp)
GACCAACGGCGAGGTATCAGACCAG
LOC_Os06g44860
OsAffx.15930.1.S1_at--840--391Chr06:27115904..27115928 (25 bp)
ATCAGACCAGAACAACGACAACAGC
LOC_Os06g44860
Target Sequence 
GTTTCACGTGCTCACGGAGTTTGATGAGGCCAAGAGGAGCTGCCGGAAGCGGCTGGCGGAGCACAACCGTCGCCGGCGGA
AGCCGGCGGCGGCGGCGACGACCGCCGTGGCGGCGGCCAAGGACGCGGCGGCGGCGCCGGTAGCCGCCGGGAAGAAGCCT
AGCGGCGGCGCCGCCACGTCTTACACCGGTGACAACAAGAACGTGGTGTCCATGAGCGCGGCCAAGTCGCCCATCTCGTC
GAACACCAGCGTGATCAGCTGCCTGCCCGAGCAGGGCAAGCATGCGGCGGCGGCGGCGAGGCCGACGGCGCTCACGCTCG
GCGGCGCGCCGCCGCACGAGAGCTCCGCGCCGCAGATCGGCGCCATGCTCCATCACCACCACCATCACCAGCAAGACCAC
ATGCAGGTGAGCTCCCTGGTCCACATCAATGGCGGCGGCGGCGGCGGTAGCAACAACATCTTGTCGTGCTCGTCGGTGTG
CTCCAGCGCGCTGCCGTCGACGGCGACCAACGGCGAGGTATCAGACCAGAACAACGACAACAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15930.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis