Browse Element(s) Details


OsAffx.28109.1.S1_x_at

Description tigr:9634.m04350
TID=OsAffx.28109.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to maturase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4488010/11Type II intron maturase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44849NANA6+27101096..27101387NA
LOC_Os06g44860OsAffx.15930.1.S1_at11/116+27113989..27115985SBP domain containing protein, expressed
LOC_Os06g44860Os.45980.1.S1_s_at1/116+27113989..27115985SBP domain containing protein, expressed
LOC_Os06g44870OsAffx.15931.1.S1_s_at11/116+27122728..27123655hypothetical protein
LOC_Os06g44880OsAffx.28109.1.S1_x_at10/116+27125263..27129159Type II intron maturase family protein
LOC_Os06g44890Os.14309.1.S1_at11/116+27134558..27143860Villin-4, putative, expressed
LOC_Os06g44900Os.54745.1.S1_at11/116+27147695..27149753expressed protein
LOC_Os06g44910Os.7152.1.S1_at10/116+27150479..27153089Glutaredoxin family protein, expressed
LOC_Os06g44920NANA6+27153896..27155263F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006278biological_processRNA-dependent DNA replication
GO:0008380biological_processRNA splicing
GO:0003723molecular_functionRNA binding
GO:0003964molecular_functionRNA-directed DNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28109.1.S1_x_at--392--5251Chr06:27127249..27127273 (25 bp)
GAATCTATCTGATCCAAAGCCTGTG
LOC_Os06g44880
OsAffx.28109.1.S1_x_at--246--2671Chr06:27127233..27127257 (25 bp)
AAGCCTGTGGATGGAGCCTTGACAA
LOC_Os06g44880
OsAffx.28109.1.S1_x_at--681--6551Chr06:27127196..27127220 (25 bp)
GATTAGCTGTTGATGACACCACCTA
LOC_Os06g44880
OsAffx.28109.1.S1_x_at--548--291Chr06:27127122..27127146 (25 bp)
ATACGTTTACTCCAGAATCGTCTAA
LOC_Os06g44880
OsAffx.28109.1.S1_x_at--333--8891Chr06:27125873..27125897 (25 bp)
TGAGGTGCTGTCATCCATGGTCAAA
LOC_Os06g44880
OsAffx.28109.1.S1_x_at--415--8571Chr06:27125856..27125880 (25 bp)
TGGTCAAAGTGGTTTCCTGCTTCTA
LOC_Os06g44880
OsAffx.28109.1.S1_x_at--770--9071Chr06:27125839..27125863 (25 bp)
TGCTTCTATCTCACATGGCCATGTA
LOC_Os06g44880
OsAffx.28109.1.S1_x_at--18--6611NONE
GATTGTTGTCATGGCTGGCATTGGC
NONE
OsAffx.28109.1.S1_x_at--511--3271Chr06:27125399..27125423 (25 bp)
CAACAGGTCCATGCCGACGGTGGAA
LOC_Os06g44880
OsAffx.28109.1.S1_x_at--1025--10171Chr06:27125372..27125396 (25 bp)
TATTTGGTGGTGTCCGGAGCACAGC
LOC_Os06g44880
OsAffx.28109.1.S1_x_at--402--6591Chr06:27125293..27125317 (25 bp)
GATTGCGACTGCACGGTCAGGATTA
LOC_Os06g44880
Target Sequence 
GAATCTATCTGATCCAAAGCCTGTGGATGGAGCCTTGACAATGATCTTTGTCAGATTAGCTGTTGATGACACCACCTATC
CATGTGTGGCACATTTTTGTGCTGAAACAGACACTGTGATTTATCGAATACGTTTACTCCAGAATCGTCTAAATGTAGAT
CCTCTGAATGAGAAGAAGTGGTTGGTTGATTCTGTTATTGATTTGGCAAGAAATCTCGTGATACCAACCGAACTGATTGT
TATGGTCAGGATGTATCATCATGATGAGGTGCTGTCATCCATGGTCAAAGTGGTTTCCTGCTTCTATCTCACATGGCCAT
GTAGGGATATCAGCATGCTAAACAGGAAGCTGTTCATGATTGTTGTCATGGCTGGCATTGGCTTCCATGAAATGGACGAC
AAGGCAACAGGTCCATGCCGACGGTGGAACATATTTGGTGGTGTCCGGAGCACAGCGGCCGTCGACACCTCGTATGCACA
GGACCTCGATCAAAGCCTCAAAGGCAGGCAGATTGCGACTGCACGGTCAGGATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28109.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis