Browse Element(s) Details


Os.7152.1.S1_at

Description gb:AK058431.1
DB_XREF= gi:32968449
TID=Os.7152.1
CNT=30
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7152 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-015-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-015-E11, full insert sequence.
FL= gb:AK058431.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4491010/11Glutaredoxin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44880OsAffx.28109.1.S1_x_at10/116+27125263..27129159Type II intron maturase family protein
LOC_Os06g44890Os.14309.1.S1_at11/116+27134558..27143860Villin-4, putative, expressed
LOC_Os06g44900Os.54745.1.S1_at11/116+27147695..27149753expressed protein
LOC_Os06g44910Os.7152.1.S1_at10/116+27150479..27153089Glutaredoxin family protein, expressed
LOC_Os06g44920NANA6+27153896..27155263F-box domain containing protein
LOC_Os06g44930OsAffx.5108.1.S1_s_at11/116+27161269..27162328expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0008794molecular_functionarsenate reductase (glutaredoxin) activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7152.1.S1_at--120--7131NONE
GTCATACTGCCCGTACTGTAGAAGA
NONE
Os.7152.1.S1_at--109--3491Chr06:27152547..27152571 (25 bp)
CAGGATGCCTTATCTGACATGGTTG
LOC_Os06g44910
Os.7152.1.S1_at--819--6611Chr06:27152568..27152592 (25 bp)
GTTGGCAGGCGAACTGTTCCTCAAG
LOC_Os06g44910
Os.7152.1.S1_at--324--10411Chr06:27152594..27152618 (25 bp)
TTTTGTCCATGGGAAGCACCTGGGT
LOC_Os06g44910
Os.7152.1.S1_at--911--3891Chr06:27152613..27152729 (25 bp)
CTGGGTGGCTCTGATGATACTGTTG
LOC_Os06g44910
Os.7152.1.S1_at--107--6831Chr06:27152801..27152825 (25 bp)
GTTTAGCATCAATGGCAGGCCTCTT
LOC_Os06g44910
Os.7152.1.S1_at--1127--871Chr06:27152817..27152841 (25 bp)
AGGCCTCTTTCATTTCCATAGAACA
LOC_Os06g44910
Os.7152.1.S1_at--788--8631Chr06:27152885..27152909 (25 bp)
TGTGAATGTACCTCTTTAGACCCCT
LOC_Os06g44910
Os.7152.1.S1_at--793--5811Chr06:27152903..27152927 (25 bp)
GACCCCTTTAAACTGTACTCTATGA
LOC_Os06g44910
Os.7152.1.S1_at--439--6791Chr06:27152960..27152984 (25 bp)
GTTATTTGCATAGGCCATCGTAATT
LOC_Os06g44910
Os.7152.1.S1_at--103--71Chr06:27152986..27153010 (25 bp)
ATTGCATCGCAATCAGCATTCTTCC
LOC_Os06g44910
Target Sequence 
GTCATACTGCCCGTACTGTAGAAGAGCCAAAGCTGTGTTCAAGGAACTTGAACTGAAGAAGGAGCCGTATGTTGTGGAGC
TTGATCAACGAGAGGATGGTTGGGAGATTCAGGATGCCTTATCTGACATGGTTGGCAGGCGAACTGTTCCTCAAGTTTTT
GTCCATGGGAAGCACCTGGGTGGCTCTGATGATACTGTTGAAGCATATGAGAGTGGCAAGCTAGCCAAACTTTTGAACAT
TGATGTCAAAGAAGATCTTTGAGTAGTAATAGTTTAGCATCAATGGCAGGCCTCTTTCATTTCCATAGAACATACCCAAA
TACTATGCAACTATGAATTCTTCATAGAATTTGGCTGTGAATGTACCTCTTTAGACCCCTTTAAACTGTACTCTATGACA
AACCGACAATACCTCCGNTTACCTCACATTTGTTATTTGCATAGGCCATCGTAATTGATTGCATCGCAATCAGCATTCTT
CC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7152.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis