Browse Element(s) Details


OsAffx.5108.1.S1_s_at

Description tigr:9634.m04355
TID=OsAffx.5108.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4493011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44890Os.14309.1.S1_at11/116+27134558..27143860Villin-4, putative, expressed
LOC_Os06g44900Os.54745.1.S1_at11/116+27147695..27149753expressed protein
LOC_Os06g44910Os.7152.1.S1_at10/116+27150479..27153089Glutaredoxin family protein, expressed
LOC_Os06g44920NANA6+27153896..27155263F-box domain containing protein
LOC_Os06g44930OsAffx.5108.1.S1_s_at11/116+27161269..27162328expressed protein
LOC_Os06g44940OsAffx.1353.1.S1_x_at1/116+27178432..27178986transposon protein, putative, unclassified
LOC_Os06g44950NANA6+27183368..27189523retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.5108.1.S1_s_at--402--6451Chr06:27161579..27161603 (25 bp)
GATCACCTTCGCGTCGATCTGAACG
LOC_Os06g44930
OsAffx.5108.1.S1_s_at--186--5451Chr06:27161559..27161583 (25 bp)
GAACGCCATTGCCACAGCTGGAAGA
LOC_Os06g44930
OsAffx.5108.1.S1_s_at--299--9891Chr06:27161524..27161548 (25 bp)
TACTACTCGAATCTCCAAGAATGGC
LOC_Os06g44930
OsAffx.5108.1.S1_s_at--1025--8431Chr06:27161503..27161527 (25 bp)
TGGCCATGAATTCCCATACGTACGA
LOC_Os06g44930
OsAffx.5108.1.S1_s_at--710--4171Chr06:27161491..27161515 (25 bp)
CCCATACGTACGACATGTGTGTGCT
LOC_Os06g44930
OsAffx.5108.1.S1_s_at--177--9071Chr06:27161470..27161494 (25 bp)
TGCTGCCCCGACAAGTTTGGTTAGT
LOC_Os06g44930
OsAffx.5108.1.S1_s_at--266--211Chr06:27161439..27161463 (25 bp)
ATTTGCAGTGGCTTAATTTCTTCTT
LOC_Os06g44930
OsAffx.5108.1.S1_s_at--364--9851Chr06:27161377..27161401 (25 bp)
TAAATACTTCTTGCTCAGACTGCGC
LOC_Os06g44930
OsAffx.5108.1.S1_s_at--192--7131Chr06:27161346..27161370 (25 bp)
GTCATCGCGCAGGTCAGAACGAAGA
LOC_Os06g44930
OsAffx.5108.1.S1_s_at--608--6451Chr06:27161315..27161339 (25 bp)
GATCAACTCCTGCAAAATCGCTGTT
LOC_Os06g44930
OsAffx.5108.1.S1_s_at--97--3051Chr06:27161300..27161324 (25 bp)
AATCGCTGTTCACAGTTGATCATGT
LOC_Os06g44930
Target Sequence 
GATCACCTTCGCGTCGATCTGAACGCCATTGCCACAGCTGGAAGAGTGGGATAGATACTACTCGAATCTCCAAGAATGGC
CATGAATTCCCATACGTACGACATGTGTGTGCTGCCCCGACAAGTTTGGTTAGTTTCAGAATTTGCAGTGGCTTAATTTC
TTCTTTCTGAGACAAGAACATCATGTCCAAATAATCGAATTGTAAATACTTCTTGCTCAGACTGCGCGAAAATGTCATCG
CGCAGGTCAGAACGAAGAATTCAAGATCAACTCCTGCAAAATCGCTGTTCACAGTTGATCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.5108.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis