Browse Element(s) Details


OsAffx.15931.1.S1_s_at

Description tigr:9634.m04349
TID=OsAffx.15931.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4487011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g44849NANA6+27101096..27101387NA
LOC_Os06g44860OsAffx.15930.1.S1_at11/116+27113989..27115985SBP domain containing protein, expressed
LOC_Os06g44860Os.45980.1.S1_s_at1/116+27113989..27115985SBP domain containing protein, expressed
LOC_Os06g44870OsAffx.15931.1.S1_s_at11/116+27122728..27123655hypothetical protein
LOC_Os06g44880OsAffx.28109.1.S1_x_at10/116+27125263..27129159Type II intron maturase family protein
LOC_Os06g44890Os.14309.1.S1_at11/116+27134558..27143860Villin-4, putative, expressed
LOC_Os06g44900Os.54745.1.S1_at11/116+27147695..27149753expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15931.1.S1_s_at--494--1911Chr06:27122909..27122933 (25 bp)
ACGTGCAGACCTGCGGGTACGAGGA
LOC_Os06g44870
OsAffx.15931.1.S1_s_at--109--1911Chr06:27122885..27122909 (25 bp)
ACGTGCAGGTGATGTGGAACATGCT
LOC_Os06g44870
OsAffx.15931.1.S1_s_at--576--7331Chr06:27122883..27122907 (25 bp)
GTGCAGGTGATGTGGAACATGCTCA
LOC_Os06g44870
OsAffx.15931.1.S1_s_at--1099--5011Chr06:27122881..27122905 (25 bp)
GCAGGTGATGTGGAACATGCTCAGC
LOC_Os06g44870
OsAffx.15931.1.S1_s_at--224--3471Chr06:27122880..27122904 (25 bp)
CAGGTGATGTGGAACATGCTCAGCT
LOC_Os06g44870
OsAffx.15931.1.S1_s_at--1002--1031Chr06:27122879..27122903 (25 bp)
AGGTGATGTGGAACATGCTCAGCTC
LOC_Os06g44870
OsAffx.15931.1.S1_s_at--55--7771Chr06:27122878..27122902 (25 bp)
GGTGATGTGGAACATGCTCAGCTCG
LOC_Os06g44870
OsAffx.15931.1.S1_s_at--216--3951Chr06:27122826..27122850 (25 bp)
CGGAAGCGTGCGTTGTGGCGGCTGC
LOC_Os06g44870
OsAffx.15931.1.S1_s_at--833--4231Chr06:27122761..27122785 (25 bp)
CCGAGGCATGCAGCAGCGTGAACCG
LOC_Os06g44870
OsAffx.15931.1.S1_s_at--659--6191Chr06:27122759..27122783 (25 bp)
GAGGCATGCAGCAGCGTGAACCGAA
LOC_Os06g44870
OsAffx.15931.1.S1_s_at--505--931Chr06:27122758..27122782 (25 bp)
AGGCATGCAGCAGCGTGAACCGAAT
LOC_Os06g44870
Target Sequence 
ACGTGCAGACCTGCGGGTACGAGGACGTGCAGGTGATGTGGAACATGCTCAGCTCGGAGAAGGAGGCGGCGCCGCCGCCG
CCGCGGAAGCGTGCGTTGTGGCGGCTGCGGCTGCCGGTCTGGCCCGCCGCCGTCTGGTCGCCGCGCGGCCGAGGCATGCA
GCAGCGTGAACCGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15931.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis