Browse Element(s) Details


OsAffx.15951.1.S1_at

Description tigr:9634.m04507
TID=OsAffx.15951.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Patatin-like phospholipase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4635011/11Patatin-like phospholipase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46330Os.20278.1.S1_at11/116+28089141..28093399Protein kinase domain containing protein, expressed
LOC_Os06g46340Os.48503.2.S1_at11/116+28099803..28104864Alpha-glucosidase precursor, putative, expressed
LOC_Os06g46350OsAffx.15951.1.S1_at11/116+28108238..28109953Patatin-like phospholipase family protein, expressed
LOC_Os06g46360OsAffx.28131.1.S1_at11/116+28128074..28129081hypothetical protein
LOC_Os06g46366Os.17420.1.S1_at11/116+28132803..28137103Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045735molecular_functionnutrient reservoir activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15951.1.S1_at--600--9411Chr06:28109070..28109094 (25 bp)
TCGTGCTGTCCCTCGGCGGGAACAA
LOC_Os06g46350
OsAffx.15951.1.S1_at--726--2111Chr06:28108887..28108907 (21 bp)
ACATGGTGGACCAAGCTGTATCAAT
LOC_Os06g46350
OsAffx.15951.1.S1_at--486--2691Chr06:28108875..28108899 (25 bp)
AAGCTGTATCAATGGCGTTCGGCGA
LOC_Os06g46350
OsAffx.15951.1.S1_at--266--4031Chr06:28108860..28108884 (25 bp)
CGTTCGGCGAGTGCAGGGCAACCAA
LOC_Os06g46350
OsAffx.15951.1.S1_at--363--9451Chr06:28108857..28108881 (25 bp)
TCGGCGAGTGCAGGGCAACCAACTA
LOC_Os06g46350
OsAffx.15951.1.S1_at--1056--7591Chr06:28108845..28108869 (25 bp)
GGGCAACCAACTACATCCGTATCCA
LOC_Os06g46350
OsAffx.15951.1.S1_at--31--2031Chr06:28108512..28108860 (25 bp)
ACTACATCCGTATCCAGGGCAATGG
LOC_Os06g46350
OsAffx.15951.1.S1_at--980--571Chr06:28108501..28108522 (22 bp)
ATCCAGGGCAATGGCATTGTGGCCG
LOC_Os06g46350
OsAffx.15951.1.S1_at--749--7391Chr06:28108402..28108426 (25 bp)
GTGATGGCGCAGACGAACGGCGAGC
LOC_Os06g46350
OsAffx.15951.1.S1_at--957--6131Chr06:28108349..28108373 (25 bp)
GAGGGAGCACCACCGGAGGATGGAG
LOC_Os06g46350
OsAffx.15951.1.S1_at--1126--7491Chr06:28108312..28108336 (25 bp)
GTGGTGCTCATCAAGCCGTCGGCGA
LOC_Os06g46350
Target Sequence 
TCGTGCTGTCCCTCGGCGGGAACAACGCCGCCGCCGGCCCCCGCGCGTCGTCGTCGAGCCTCCTGCGCATCGCCGGAGCT
TGCCAGGCCGACATGGTGGACCAAGCTGTATCAATGGCGTTCGGCGAGTGCAGGGCAACCAACTACATCCGTATCCAGGG
CAATGGCATTGTGGCCGGAGCGGCGGCGGCGACGGCGGAGGCGGCGATGACGGAGAGGAGCGTGGAGTCGGTGCTGTTCA
GGGGGAAGAAGGTGATGGCGCAGACGAACGGCGAGCGGCTGGACGGCGTGGCGGAGCAGCTGGTGAGGGAGCACCACCGG
AGGATGGAGAGCAAGGCGCCGGTGGTGCTCATCAAGCCGTCGGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15951.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis