Browse Element(s) Details


OsAffx.15953.1.S1_at

Description tigr:9634.m04515
TID=OsAffx.15953.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4642011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46380Os.7455.1.S1_at11/116+28142933..28147374Protein prenyltransferase alpha subunit repeat containing protein, expressed
LOC_Os06g46390Os.51643.1.S1_at11/116+28147995..28148791small nuclear ribonucleoprotein, putative, expressed
LOC_Os06g46400Os.18000.1.A1_at11/116+28150362..28155785YT521-B-like family protein, expressed
LOC_Os06g46410Os.22750.1.S1_at11/116+28157512..28163559auxin response factor 3, putative, expressed
LOC_Os06g46410OsAffx.28217.1.S1_at1/116+28157512..28163559auxin response factor 3, putative, expressed
LOC_Os06g46420OsAffx.15953.1.S1_at11/116+28171763..28172389hypothetical protein
LOC_Os06g46430OsAffx.28132.1.S1_at8/116+28176435..28177924hypothetical protein
LOC_Os06g46440OsAffx.15954.1.S1_at11/116+28188529..28189857expressed protein
LOC_Os06g46450Os.21295.1.S1_at11/116+28189959..28195207Polyprenyl synthetase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15953.1.S1_at--413--1351Chr06:28172329..28172353 (25 bp)
AGAGATATTTGCTCTCTTTCGCCGA
LOC_Os06g46420
OsAffx.15953.1.S1_at--608--10271Chr06:28172322..28172346 (25 bp)
TTTGCTCTCTTTCGCCGACAGGTGG
LOC_Os06g46420
OsAffx.15953.1.S1_at--40--7971Chr06:28172300..28172324 (25 bp)
TGGGACCCCGGTTATTCCTGTAATG
LOC_Os06g46420
OsAffx.15953.1.S1_at--601--91Chr06:28171891..28172311 (25 bp)
ATTCCTGTAATGGTGACGGCTTCTC
LOC_Os06g46420
OsAffx.15953.1.S1_at--207--1931Chr06:28171876..28171900 (25 bp)
ACGGCTTCTCAGACTGAAAACGTCG
LOC_Os06g46420
OsAffx.15953.1.S1_at--667--8551Chr06:28171862..28171886 (25 bp)
TGAAAACGTCGGTAAAGCAGGGCCT
LOC_Os06g46420
OsAffx.15953.1.S1_at--724--8391Chr06:28171842..28171866 (25 bp)
GGCCTCAAGGCCGTACGTACGTGAC
LOC_Os06g46420
OsAffx.15953.1.S1_at--820--6991Chr06:28171826..28171850 (25 bp)
GTACGTGACCGACAACTCTTGCAGG
LOC_Os06g46420
OsAffx.15953.1.S1_at--180--5811Chr06:28171820..28171844 (25 bp)
GACCGACAACTCTTGCAGGACTTCT
LOC_Os06g46420
OsAffx.15953.1.S1_at--260--931Chr06:28171804..28171828 (25 bp)
AGGACTTCTCCTGGCCATTACGACA
LOC_Os06g46420
OsAffx.15953.1.S1_at--73--3931Chr06:28171794..28171818 (25 bp)
CTGGCCATTACGACAACGTGGATTT
LOC_Os06g46420
Target Sequence 
AGAGATATTTGCTCTCTTTCGCCGACAGGTGGGACCCCGGTTATTCCTGTAATGGTGACGGCTTCTCAGACTGAAAACGT
CGGTAAAGCAGGGCCTCAAGGCCGTACGTACGTGACCGACAACTCTTGCAGGACTTCTCCTGGCCATTACGACAACGTGG
ATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15953.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis