Browse Element(s) Details

OsAffx.15971.1.S1_at

Description

tigr:9634.m04615
TID=OsAffx.15971.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to expansin-related protein 2 precursor (ath-expgamma-1.1). (mouse-ear cress
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g47360	9/11	Expansin-related protein 2 precursor, putative, expressed
LOC_Os06g47390	1/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g47320	Os.11699.1.S1_at	10/11	6	+	28681054..28686080	T-complex protein 1, eta subunit, putative, expressed
LOC_Os06g47330	Os.14107.1.S1_at	11/11	6	+	28687839..28693004	EH-domain containing protein 2, putative, expressed
LOC_Os06g47340	Os.425.1.S1_s_at	11/11	6	+	28693933..28697428	glycosyltransferase, putative, expressed
LOC_Os06g47350	Os.9229.3.S1_x_at	11/11	6	+	28698611..28705482	RNA polymerase I specific transcription initiation factor RRN3 family protein, expressed
LOC_Os06g47350	Os.9229.2.S1_x_at	10/11	6	+	28698611..28705482	RNA polymerase I specific transcription initiation factor RRN3 family protein, expressed
LOC_Os06g47360	OsAffx.15971.1.S1_x_at	9/11	6	+	28706293..28707351	Expansin-related protein 2 precursor, putative, expressed
LOC_Os06g47360	OsAffx.15971.1.S1_at	9/11	6	+	28706293..28707351	Expansin-related protein 2 precursor, putative, expressed
LOC_Os06g47370	NA	NA	6	+	28709015..28711976	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g47380	Os.10703.2.S1_x_at	1/11	6	+	28712293..28718382	retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g47390	OsAffx.5135.1.S1_at	11/11	6	+	28719941..28720587	hypothetical protein
LOC_Os06g47390	OsAffx.15971.1.S1_at	1/11	6	+	28719941..28720587	hypothetical protein
LOC_Os06g47390	OsAffx.15971.1.S1_x_at	1/11	6	+	28719941..28720587	hypothetical protein
LOC_Os06g47400	OsAffx.15972.1.S1_at	11/11	6	+	28722597..28723358	F-box domain containing protein
LOC_Os06g47410	OsAffx.5136.1.S1_at	11/11	6	+	28724243..28725531	hypothetical protein
LOC_Os06g47410	OsAffx.5118.1.S1_x_at	3/11	6	+	28724243..28725531	hypothetical protein
LOC_Os06g47420	OsAffx.5118.1.S1_x_at	1/11	6	+	28725889..28727266	transposon protein, putative, unclassified
LOC_Os06g47430	OsAffx.28148.1.S1_x_at	11/11	6	+	28731634..28733317	hypothetical protein

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0005576	cellular_component	extracellular region

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.15971.1.S1_at--832--843	1	Chr06:28707265..28707289 (25 bp)	GGCCATCGAAGGGACCGCCACCTTC	LOC_Os06g47360
OsAffx.15971.1.S1_at--750--1057	1	Chr06:28707243..28707267 (25 bp)	TTCTACACCGTTTACACCCGTACAT	LOC_Os06g47360
OsAffx.15971.1.S1_at--266--1033	1	Chr06:28707233..28707257 (25 bp)	TTTACACCCGTACATCTCCAAACTG	LOC_Os06g47360
OsAffx.15971.1.S1_at--792--701	1	Chr06:28707224..28707248 (25 bp)	GTACATCTCCAAACTGCTCCTTAAT	LOC_Os06g47360
OsAffx.15971.1.S1_at--540--47	1	Chr06:28707220..28707244 (25 bp)	ATCTCCAAACTGCTCCTTAATTCTG	LOC_Os06g47360
OsAffx.15971.1.S1_at--575--381	1	Chr06:28707218..28707242 (25 bp)	CTCCAAACTGCTCCTTAATTCTGAA	LOC_Os06g47360
OsAffx.15971.1.S1_at--215--255	1	Chr06:28707213..28707237 (25 bp)	AACTGCTCCTTAATTCTGAATGATG	LOC_Os06g47360
OsAffx.15971.1.S1_at--641--385	1	NONE	CTGAATGATGTGTTTGCGTCGGCGT	NONE
OsAffx.15971.1.S1_at--293--627	1	NONE	GATGTGTTTGCGTCGGCGTGCTACG	NONE
OsAffx.15971.1.S1_at--704--729	1	Chr06:28706570..28706594 (25 bp)	GTGCGGGAGGATGTACACGGTGCGT	LOC_Os06g47360
OsAffx.15971.1.S1_at--172--709	2	Chr06:28706491..28706515 (25 bp)	GTCAAGATCGTCGACCGCTGCCCGT	LOC_Os06g47360

Target Sequence

GGCCATCGAAGGGACCGCCACCTTCTACACCGTTTACACCCGTACATCTCCAAACTGCTCCTTAATTCTGAATGATGTGT
TTGCGTCGGCGTGCTACGGGTTCCAGGACCAGGGGACGATGATCGCGGCGGCGAGCGACGGGCTGTGGGACGGCGGGCGG
GCGTGCGGGAGGATGTACACGGTGCGTTGCGTCAGGGGCACCAACGCCGTGCCCAACCCCTGCAACGGCGGCACGGTCAC
CGTCAAGATCGTCGACCGCTGCCCGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis