Browse Element(s) Details


OsAffx.15971.1.S1_x_at

Description tigr:9634.m04615
TID=OsAffx.15971.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to expansin-related protein 2 precursor (ath-expgamma-1.1). (mouse-ear cress
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g473609/11Expansin-related protein 2 precursor, putative, expressed
LOC_Os06g473901/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g47320Os.11699.1.S1_at10/116+28681054..28686080T-complex protein 1, eta subunit, putative, expressed
LOC_Os06g47330Os.14107.1.S1_at11/116+28687839..28693004EH-domain containing protein 2, putative, expressed
LOC_Os06g47340Os.425.1.S1_s_at11/116+28693933..28697428glycosyltransferase, putative, expressed
LOC_Os06g47350Os.9229.3.S1_x_at11/116+28698611..28705482RNA polymerase I specific transcription initiation factor RRN3 family protein, expressed
LOC_Os06g47350Os.9229.2.S1_x_at10/116+28698611..28705482RNA polymerase I specific transcription initiation factor RRN3 family protein, expressed
LOC_Os06g47360OsAffx.15971.1.S1_x_at9/116+28706293..28707351Expansin-related protein 2 precursor, putative, expressed
LOC_Os06g47360OsAffx.15971.1.S1_at9/116+28706293..28707351Expansin-related protein 2 precursor, putative, expressed
LOC_Os06g47370NANA6+28709015..28711976retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g47380Os.10703.2.S1_x_at1/116+28712293..28718382retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g47390OsAffx.5135.1.S1_at11/116+28719941..28720587hypothetical protein
LOC_Os06g47390OsAffx.15971.1.S1_at1/116+28719941..28720587hypothetical protein
LOC_Os06g47390OsAffx.15971.1.S1_x_at1/116+28719941..28720587hypothetical protein
LOC_Os06g47400OsAffx.15972.1.S1_at11/116+28722597..28723358F-box domain containing protein
LOC_Os06g47410OsAffx.5136.1.S1_at11/116+28724243..28725531hypothetical protein
LOC_Os06g47410OsAffx.5118.1.S1_x_at3/116+28724243..28725531hypothetical protein
LOC_Os06g47420OsAffx.5118.1.S1_x_at1/116+28725889..28727266transposon protein, putative, unclassified
LOC_Os06g47430OsAffx.28148.1.S1_x_at11/116+28731634..28733317hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005576cellular_componentextracellular region
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15971.1.S1_x_at--369--4011Chr06:28707272..28707296 (25 bp)
CGTCGCAGGCCATCGAAGGGACCGC
LOC_Os06g47360
OsAffx.15971.1.S1_x_at--751--10571Chr06:28707243..28707267 (25 bp)
TTCTACACCGTTTACACCCGTACAT
LOC_Os06g47360
OsAffx.15971.1.S1_x_at--265--10331Chr06:28707233..28707257 (25 bp)
TTTACACCCGTACATCTCCAAACTG
LOC_Os06g47360
OsAffx.15971.1.S1_x_at--793--7011Chr06:28707224..28707248 (25 bp)
GTACATCTCCAAACTGCTCCTTAAT
LOC_Os06g47360
OsAffx.15971.1.S1_x_at--541--471Chr06:28707220..28707244 (25 bp)
ATCTCCAAACTGCTCCTTAATTCTG
LOC_Os06g47360
OsAffx.15971.1.S1_x_at--574--3811Chr06:28707218..28707242 (25 bp)
CTCCAAACTGCTCCTTAATTCTGAA
LOC_Os06g47360
OsAffx.15971.1.S1_x_at--214--2551Chr06:28707213..28707237 (25 bp)
AACTGCTCCTTAATTCTGAATGATG
LOC_Os06g47360
OsAffx.15971.1.S1_x_at--642--3851NONE
CTGAATGATGTGTTTGCGTCGGCGT
NONE
OsAffx.15971.1.S1_x_at--292--6271NONE
GATGTGTTTGCGTCGGCGTGCTACG
NONE
OsAffx.15971.1.S1_x_at--997--991Chr06:28706563..28706587 (25 bp)
AGGATGTACACGGTGCGTTGCGTCA
LOC_Os06g47360
OsAffx.15971.1.S1_x_at--173--7092Chr06:28706491..28706515 (25 bp)
GTCAAGATCGTCGACCGCTGCCCGT
LOC_Os06g47360
Target Sequence 
CGTCGCAGGCCATCGAAGGGACCGCCACCTTCTACACCGTTTACACCCGTACATCTCCAAACTGCTCCTTAATTCTGAAT
GATGTGTTTGCGTCGGCGTGCTACGGGTTCCAGGACCAGGGGACGATGATCGCGGCGGCGAGCGACGGGCTGTGGGACGG
CGGGCGGGCGTGCGGGAGGATGTACACGGTGCGTTGCGTCAGGGGCACCAACGCCGTGCCCAACCCCTGCAACGGCGGCA
CGGTCACCGTCAAGATCGTCGACCGCTGCCCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15971.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis