Browse Element(s) Details


OsAffx.16037.2.S1_s_at

Description tigr:9635.m00100
TID=OsAffx.16037.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0196011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01920Os.14676.1.S1_at11/117+557663..561469nucleolar GTP-binding protein 1, putative, expressed
LOC_Os07g01920Os.14676.1.S1_a_at11/117+557663..561469nucleolar GTP-binding protein 1, putative, expressed
LOC_Os07g01930Os.4673.1.S1_a_at10/117+561642..564353Ferredoxin, 2Fe-2S, putative, expressed
LOC_Os07g01940Os.9352.1.S1_a_at11/117+573863..580491expressed protein
LOC_Os07g01950Os.10404.1.S1_at11/117+581828..585086expressed protein
LOC_Os07g01960OsAffx.16037.2.S1_at11/117+585901..586437hypothetical protein
LOC_Os07g01960OsAffx.16037.2.S1_s_at11/117+585901..586437hypothetical protein
LOC_Os07g01970OsAffx.22516.1.S1_at11/117+586973..587809retrotransposon protein, putative, unclassified
LOC_Os07g01990OsAffx.16038.1.S1_s_at11/117+602885..605785expressed protein
LOC_Os07g01990Os.18016.1.S1_at11/117+602885..605785expressed protein
LOC_Os07g02000Os.7514.1.S1_at11/117+605984..606947expressed protein
LOC_Os07g02030OsAffx.10277.1.S1_at11/117+610802..617711Thiamine pyrophosphate enzyme, N-terminal TPP binding domain containing protein, expressed
LOC_Os07g02030OsAffx.10277.1.S1_x_at11/117+610802..617711Thiamine pyrophosphate enzyme, N-terminal TPP binding domain containing protein, expressed
LOC_Os07g02030Os.9443.1.S1_at11/117+610802..617711Thiamine pyrophosphate enzyme, N-terminal TPP binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16037.2.S1_s_at--1099--1371Chr07:586302..586407 (25 bp)
AGAGCCATGCAGACCTGGGCTGAGC
LOC_Os07g01960
OsAffx.16037.2.S1_s_at--1029--4251Chr07:586289..586310 (22 bp)
CCTGGGCTGAGCACATGATTACTTT
LOC_Os07g01960
OsAffx.16037.2.S1_s_at--463--3311Chr07:586278..586302 (25 bp)
CACATGATTACTTTGAGCGAGGGCA
LOC_Os07g01960
OsAffx.16037.2.S1_s_at--50--6771Chr07:586243..586267 (25 bp)
GTTAACCAAGCTTACCAAGTCTATG
LOC_Os07g01960
OsAffx.16037.2.S1_s_at--649--2611Chr07:586103..586127 (25 bp)
AACCCAAGGGCATAGCTGGCGTGTT
LOC_Os07g01960
OsAffx.16037.2.S1_s_at--43--7411Chr07:586083..586107 (25 bp)
GTGTTGGACAACATCGGCTACCGCC
LOC_Os07g01960
OsAffx.16037.2.S1_s_at--548--8311Chr07:586068..586092 (25 bp)
GGCTACCGCCTTCCTGAGGACAAGA
LOC_Os07g01960
OsAffx.16037.2.S1_s_at--329--2831Chr07:586038..586062 (25 bp)
AAGTTCACCATGCTCGTTATCATTC
LOC_Os07g01960
OsAffx.16037.2.S1_s_at--506--10151Chr07:586021..586045 (25 bp)
TATCATTCTGATACCCACAGTTGGA
LOC_Os07g01960
OsAffx.16037.2.S1_s_at--223--1251Chr07:586003..586027 (25 bp)
AGTTGGATACTTCTTTCTTCGGCTT
LOC_Os07g01960
OsAffx.16037.2.S1_s_at--963--9431Chr07:585985..586009 (25 bp)
TCGGCTTGTGGCTGCGTATGAGAAA
LOC_Os07g01960
Target Sequence 
AGAGCCATGCAGACCTGGGCTGAGCACATGATTACTTTGAGCGAGGGCAATGTGGAAATGTTAACCAAGCTTACCAAGTC
TATGAGCACAATAATTAAAAGCCTTGAGAAACCCAAGGGCATAGCTGGCGTGTTGGACAACATCGGCTACCGCCTTCCTG
AGGACAAGAAGGGGAAGTTCACCATGCTCGTTATCATTCTGATACCCACAGTTGGATACTTCTTTCTTCGGCTTGTGGCT
GCGTATGAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16037.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis