Browse Element(s) Details


OsAffx.16045.1.S1_at

Description tigr:9635.m00135
TID=OsAffx.16045.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0229011/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g02250Os.30485.1.S1_at11/117+721178..724795expressed protein
LOC_Os07g02260OsAffx.8843.1.S1_at11/117+724976..725668expressed protein
LOC_Os07g02270OsAffx.16043.1.S1_at11/117+734314..737018hypothetical protein
LOC_Os07g02280OsAffx.21080.1.S1_at11/117+741230..743134pentatricopeptide, putative, expressed
LOC_Os07g02290OsAffx.16045.1.S1_at11/117+747870..751388F-box domain containing protein
LOC_Os07g02300Os.27537.1.S1_at11/117+751972..761671TPR Domain containing protein, expressed
LOC_Os07g02300OsAffx.31868.1.S1_at2/117+751972..761671TPR Domain containing protein, expressed
LOC_Os07g02310NANA7+771120..772854retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16045.1.S1_at--594--9071Chr07:750602..750626 (25 bp)
TGCTTCTACTACATCCAGGAGTGGA
LOC_Os07g02290
OsAffx.16045.1.S1_at--1009--6111Chr07:750584..750608 (25 bp)
GAGTGGAATTGCTCGATCCATGCCC
LOC_Os07g02290
OsAffx.16045.1.S1_at--468--3111Chr07:750524..750548 (25 bp)
AATATAGGTTCTGTGCGGTTCGTCG
LOC_Os07g02290
OsAffx.16045.1.S1_at--1128--9451Chr07:750450..750474 (25 bp)
TCGGCCGGACAACACAATCATTCAG
LOC_Os07g02290
OsAffx.16045.1.S1_at--339--431Chr07:750434..750458 (25 bp)
ATCATTCAGGAATTCGCGTTGCTCT
LOC_Os07g02290
OsAffx.16045.1.S1_at--772--10031Chr07:750382..750406 (25 bp)
TAGACCTCCTGCTCAGCTATGAAAG
LOC_Os07g02290
OsAffx.16045.1.S1_at--288--291Chr07:748192..748216 (25 bp)
ATAGTCCTTGCCATTCGAATTGCGA
LOC_Os07g02290
OsAffx.16045.1.S1_at--1057--2651Chr07:748135..748159 (25 bp)
AAGCCATCGTGCATGGTCTCGAGGA
LOC_Os07g02290
OsAffx.16045.1.S1_at--577--6531Chr07:748076..748100 (25 bp)
GATTTTAACTTTGTGGCGCTACTGT
LOC_Os07g02290
OsAffx.16045.1.S1_at--396--5251Chr07:747986..748010 (25 bp)
GAATCATGCCAGAAGCTACGCGAGA
LOC_Os07g02290
OsAffx.16045.1.S1_at--67--7591Chr07:747943..747967 (25 bp)
GGGCTTGCCTTGAAATACACCAGAA
LOC_Os07g02290
Target Sequence 
TGCTTCTACTACATCCAGGAGTGGAATTGCTCGATCCATGCCCCGGATCTGGAGTCTCTTCGATGGGGCGATCGGTTTAA
TATAGGTTCTGTGCGGTTCGTCGGCTTCGCGCGCCTCCAGCAGCTCGCCGCCTTCACCATTCCTGTCTTTGGTCGGCCGG
ACAACACAATCATTCAGGAATTCGCGTTGCTCTTGGGGCGCTTCTCGGCTGTCTACCGTCTAGACCTCCTGCTCAGCTAT
GAAAGAGCGAATAGTCCTTGCCATTCGAATTGCGAGTGTGATGAGCACCCAGACTGGAATGAATGGGAAGCCATCGTGCA
TGGTCTCGAGGAAGCAGAAATTCGCAGCTTCAGAGGAACAGAGCATGATTTTAACTTTGTGGCGCTACTGTTCCTGGTGT
CACCAGCGCTTAAAAAAATGACGATAACTTTAGATTGTATGGCTGATGCAAGTGAGGAATCATGCCAGAAGCTACGCGAG
ATTGTAGCAGGCCACCCTGGGGCTTGCCTTGAAATACACCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16045.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis