Browse Element(s) Details


OsAffx.16080.1.S1_at

Description tigr:9635.m00378
TID=OsAffx.16080.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0447010/11GRF zinc finger family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g04390Os.50619.1.S1_at1/117+1944645..1950114hypothetical protein
LOC_Os07g04400OsAffx.5207.1.S1_at11/117+1950488..1951139hypothetical protein
LOC_Os07g04410NANA7+1951766..1952305Cytochrome P450 90D2, putative
LOC_Os07g04420Os.54102.1.S1_x_at9/117+1954422..1957966hypothetical protein
LOC_Os07g04420Os.53654.1.S1_at3/117+1954422..1957966hypothetical protein
LOC_Os07g04420Os.27698.1.A1_x_at1/117+1954422..1957966hypothetical protein
LOC_Os07g04430NANA7+1958813..1962780expressed protein
LOC_Os07g04440Os.49250.1.S1_at8/117+1963593..1964641expressed protein
LOC_Os07g04450Os.16140.1.S1_at10/117+1968074..1970246expressed protein
LOC_Os07g04460NANA7+1972628..1972867hypothetical protein
LOC_Os07g04470OsAffx.16080.1.S1_at10/117+1974591..1975788GRF zinc finger family protein
LOC_Os07g04480Os.49936.1.S1_at11/117+1976356..1979759SWIM zinc finger family protein, expressed
LOC_Os07g04490OsAffx.5209.1.S1_at10/117+1981923..1983107hypothetical protein
LOC_Os07g04500Os.9770.1.S1_at10/117+1983792..1986156expressed protein
LOC_Os07g04510OsAffx.31549.2.S1_x_at11/117+1987998..1989084TCP family transcription factor containing protein
LOC_Os07g04510OsAffx.31549.1.S1_x_at4/117+1987998..1989084TCP family transcription factor containing protein
LOC_Os07g04520OsAffx.28262.1.S1_x_at11/117+1990926..1992961Protein kinase domain containing protein, expressed
LOC_Os07g04520OsAffx.28262.1.S1_at11/117+1990926..1992961Protein kinase domain containing protein, expressed
LOC_Os07g04530Os.4742.1.S1_at11/117+1995047..2004298GYF domain containing protein, expressed
LOC_Os07g04530Os.4742.1.S2_at11/117+1995047..2004298GYF domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16080.1.S1_at--1128--9292Chr07:1974646..1974670 (25 bp)
TCCCGTATCGGGTAGGTCCAATGGA
LOC_Os07g04470
OsAffx.16080.1.S1_at--973--3971Chr07:1974682..1974706 (25 bp)
CGGTGTTCTGTCGTTGCAAGGCGAA
LOC_Os07g04470
OsAffx.16080.1.S1_at--1134--3371Chr07:1974709..1974733 (25 bp)
CAGCGAGATGGATATCCTGGAGCGT
LOC_Os07g04470
OsAffx.16080.1.S1_at--1016--4011Chr07:1974731..1974755 (25 bp)
CGTAGATAATCCTGGCCGGCGGTAT
LOC_Os07g04470
OsAffx.16080.1.S1_at--652--1791Chr07:1974742..1974766 (25 bp)
CTGGCCGGCGGTATTTTAAGTGTCG
LOC_Os07g04470
OsAffx.16080.1.S1_at--28--10511Chr07:1974757..1974777 (21 bp)
TTAAGTGTCGCAATGCTCAGGATGG
LOC_Os07g04470
OsAffx.16080.1.S1_at--936--4591Chr07:1974892..1974916 (25 bp)
GCGACAAGTTGACGAGCAGTTTTCT
LOC_Os07g04470
OsAffx.16080.1.S1_at--535--4071Chr07:1974904..1974928 (25 bp)
CGAGCAGTTTTCTTAGAGAGTTGTT
LOC_Os07g04470
OsAffx.16080.1.S1_at--238--8811Chr07:1974925..1974949 (25 bp)
TGTTGAATGACCTGAGAGATGCTGT
LOC_Os07g04470
OsAffx.16080.1.S1_at--170--6031Chr07:1974940..1974964 (25 bp)
GAGATGCTGTGATGTCGCTTAGGAT
LOC_Os07g04470
OsAffx.16080.1.S1_at--751--5851NONE
GACCAGCTGCGGCAGGAGATTACAA
NONE
Target Sequence 
TCCCGTATCGGGTAGGTCCAATGGAGTATCAACCCCCGGTGTTCTGTCGTTGCAAGGCGAAAGCAGCGAGATGGATATCC
TGGAGCGTAGATAATCCTGGCCGGCGGTATTTTAAGTGTCGCAATGCTCAGGATGGGGGATGTGATTTTTTTGATTGGTG
CGACAAGTTGACGAGCAGTTTTCTTAGAGAGTTGTTGAATGACCTGAGAGATGCTGTGATGTCGCTTAGGATGGAGAAGG
ACCAGCTGCGGCAGGAGATTACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16080.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis