Browse Element(s) Details


OsAffx.16094.1.S1_at

Description tigr:9635.m00449
TID=OsAffx.16094.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Skp1 family, dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0516011/11SKP1-like protein 1A, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05140OsAffx.29313.1.S1_at1/117+2267989..2272456transposon protein, putative, Mutator sub-class
LOC_Os07g05140Os.56216.1.S1_at1/117+2267989..2272456transposon protein, putative, Mutator sub-class
LOC_Os07g05150OsAffx.28281.1.S1_x_at11/117+2284148..2284621Skp1 family, dimerisation domain containing protein
LOC_Os07g05150OsAffx.28281.1.S1_at11/117+2284148..2284621Skp1 family, dimerisation domain containing protein
LOC_Os07g05160OsAffx.16094.1.S1_at11/117+2285162..2285680SKP1-like protein 1A, putative
LOC_Os07g05160OsAffx.28281.1.S1_x_at1/117+2285162..2285680SKP1-like protein 1A, putative
LOC_Os07g05170OsAffx.5216.1.S1_at11/117+2299055..2299690hypothetical protein
LOC_Os07g05180OsAffx.28281.1.S1_x_at11/117+2309718..2310212SKP1-like protein 1A, putative
LOC_Os07g05180OsAffx.28281.1.S1_at11/117+2309718..2310212SKP1-like protein 1A, putative

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007067biological_processmitosis
GO:0007140biological_processmale meiosis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0000151cellular_componentubiquitin ligase complex
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16094.1.S1_at--149--8851Chr07:2285217..2285241 (25 bp)
TGATCAGCGCCGACGGGAAACGCTT
LOC_Os07g05160
OsAffx.16094.1.S1_at--137--7731Chr07:2285257..2285281 (25 bp)
GGTGGCGAGCCAATCGCAGCTGATA
LOC_Os07g05160
OsAffx.16094.1.S1_at--562--5071Chr07:2285272..2285296 (25 bp)
GCAGCTGATATCCAACATGATCGAG
LOC_Os07g05160
OsAffx.16094.1.S1_at--1044--8591Chr07:2285355..2285379 (25 bp)
TGGTCGTCGACTACTGCAACATGCA
LOC_Os07g05160
OsAffx.16094.1.S1_at--503--8391Chr07:2285402..2285426 (25 bp)
GGCGACACCATGAAAGCATCAAGCA
LOC_Os07g05160
OsAffx.16094.1.S1_at--451--6711Chr07:2285446..2285470 (25 bp)
GTTCGACGCCGAGTTGGTGCAAGCC
LOC_Os07g05160
OsAffx.16094.1.S1_at--45--6051Chr07:2285456..2285480 (25 bp)
GAGTTGGTGCAAGCCCTCGAGAATC
LOC_Os07g05160
OsAffx.16094.1.S1_at--160--4551Chr07:2285468..2285492 (25 bp)
GCCCTCGAGAATCCGGTGCTGTTCA
LOC_Os07g05160
OsAffx.16094.1.S1_at--586--10511Chr07:2285489..2285513 (25 bp)
TTCAAGCTGATCTTGGCGGCCAATT
LOC_Os07g05160
OsAffx.16094.1.S1_at--1125--2771Chr07:2285525..2285549 (25 bp)
AAGAGCTTGCTGGACATGACGTGCC
LOC_Os07g05160
OsAffx.16094.1.S1_at--825--5971Chr07:2285597..2285621 (25 bp)
GAGACGTTTTCGATCGAGAACGACT
LOC_Os07g05160
Target Sequence 
TGATCAGCGCCGACGGGAAACGCTTCGAGGTGACGGAGGCGGTGGCGAGCCAATCGCAGCTGATATCCAACATGATCGAG
GACGATTGCACGGAGAACGGGGTGCGTCTCCCCAACGTCGACGGCGACATCCTCACCATGGTCGTCGACTACTGCAACAT
GCACGCCGGCGACGCCGCCGCCGCCGGCGACACCATGAAAGCATCAAGCACGGAGGAGGAGCTGAAGAAGTTCGACGCCG
AGTTGGTGCAAGCCCTCGAGAATCCGGTGCTGTTCAAGCTGATCTTGGCGGCCAATTTCTTGAACATCAAGAGCTTGCTG
GACATGACGTGCCAGCGCGTGGCGGACATGATGTCCGGCAAGACGCCGGAGCAGATGAGGGAGACGTTTTCGATCGAGAA
CGACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16094.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis