Browse Element(s) Details


OsAffx.16109.1.S1_at

Description tigr:9635.m00525
TID=OsAffx.16109.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0586011/11hypothetical protein
LOC_Os05g3621011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g05800OsAffx.28293.1.S1_at10/117+2789750..2790857Lactoylglutathione lyase, putative, expressed
LOC_Os07g05810Os.8946.1.S1_at11/117+2792436..2795656expressed protein
LOC_Os07g05820Os.51287.1.S1_at11/117+2795991..2799663expressed protein
LOC_Os07g05820Os.7873.1.S1_at11/117+2795991..2799663expressed protein
LOC_Os07g05820Os.7873.1.S1_x_at11/117+2795991..2799663expressed protein
LOC_Os07g05830OsAffx.5224.1.S1_at9/117+2800228..2802509ZIM motif family protein, expressed
LOC_Os07g05840OsAffx.28294.2.S1_x_at11/117+2805240..2808129expressed protein
LOC_Os07g05840OsAffx.28294.2.S1_at11/117+2805240..2808129expressed protein
LOC_Os07g05840Os.10038.1.S1_s_at11/117+2805240..2808129expressed protein
LOC_Os07g05840OsAffx.28294.3.S1_x_at8/117+2805240..2808129expressed protein
LOC_Os07g05850NANA7+2808505..2812192transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g05860OsAffx.16109.1.S1_at11/117+2812436..2813389hypothetical protein
LOC_Os07g05870Os.57565.1.S1_at7/117+2817437..2821212expressed protein
LOC_Os07g05880Os.18840.1.S1_at11/117+2822624..2824937Kelch motif family protein, expressed
LOC_Os07g05890NANA7+2827967..2828317hypothetical protein
LOC_Os07g05900OsAffx.28295.1.S1_x_at11/117+2837776..2838279hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16109.1.S1_at--143--7913Chr11:24606956..24606980 (25 bp)
GGAGTCCCGGGATTAGGTCCTGATC
NONE
OsAffx.16109.1.S1_at--148--4193Chr11:24606961..24606985 (25 bp)
CCCGGGATTAGGTCCTGATCTGGAT
NONE
OsAffx.16109.1.S1_at--297--153Chr11:24606967..24606991 (25 bp)
ATTAGGTCCTGATCTGGATGGAGAT
NONE
OsAffx.16109.1.S1_at--901--3393Chr11:24607009..24607033 (25 bp)
CAGCTTCAGCTCTGGACTTGGAGCA
NONE
OsAffx.16109.1.S1_at--207--4913Chr11:24607011..24607035 (25 bp)
GCTTCAGCTCTGGACTTGGAGCAAA
NONE
OsAffx.16109.1.S1_at--236--2512Chr07:2813164..2813188 (25 bp)
AACATCTTCTAGTCCACCATTGGAG
LOC_Os07g05860
OsAffx.16109.1.S1_at--1000--432Chr07:2813167..2813191 (25 bp)
ATCTTCTAGTCCACCATTGGAGCAA
LOC_Os07g05860
OsAffx.16109.1.S1_at--735--1113Chr11:24607079..24607103 (25 bp)
AGTCCACCATTGGAGCAAACCCTAG
NONE
OsAffx.16109.1.S1_at--784--1493Chr11:24607092..24607115 (24 bp)
AGCAAACCCTAGCCACAGGAGAGCT
NONE
OsAffx.16109.1.S1_at--151--4412Chr07:2813198..2813222 (25 bp)
GCCACAGGAGAGCTACAATATGAAG
LOC_Os07g05860
OsAffx.16109.1.S1_at--384--8053Chr11:24607139..24607163 (25 bp)
GGAGAAACCTACATGGGTGGATTTG
NONE
Target Sequence 
GGAGTCCCGGGATTAGGTCCTGATCTGGATGGAGATGAGGCAAGGATTNANTNCAGCTTCAGCTCTGGACTTGGAGCAAA
TCCACAGGCGCTNCAGCCACAGATCGANGCNGCAACATCTTCTAGTCCACCATTGGAGCAAACCCTAGCCACAGGAGAGC
TACAATATGAAGGGGATTCGAGGGGAGAAACCTACATGGGTGGATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis