Browse Element(s) Details


OsAffx.16226.1.S1_at

Description tigr:9635.m01206
TID=OsAffx.16226.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1230011/11hypothetical protein
LOC_Os06g072704/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12270OsAffx.10222.1.S1_x_at2/117+6893320..6895840hypothetical protein
LOC_Os07g12270Os.45902.1.A1_x_at2/117+6893320..6895840hypothetical protein
LOC_Os07g12270OsAffx.13740.1.S1_at1/117+6893320..6895840hypothetical protein
LOC_Os07g12270Os.56372.1.S1_at1/117+6893320..6895840hypothetical protein
LOC_Os07g12280NANA7+6897472..6897693hypothetical protein
LOC_Os07g12290NANA7+6902384..6902629hypothetical protein
LOC_Os07g12300OsAffx.16226.1.S1_at11/117+6918148..6918576hypothetical protein
LOC_Os07g12300OsAffx.27487.1.S1_at1/117+6918148..6918576hypothetical protein
LOC_Os07g12310OsAffx.28413.1.S1_at11/117+6935249..6937380hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16226.1.S1_at--987--9451Chr07:6918201..6918225 (25 bp)
TCTGGGAGCCAGAGCTTTTGCGAAC
LOC_Os07g12300
OsAffx.16226.1.S1_at--654--8091Chr07:6918205..6918229 (25 bp)
GGAGCCAGAGCTTTTGCGAACTTCA
LOC_Os07g12300
OsAffx.16226.1.S1_at--1153--4411Chr07:6918208..6918232 (25 bp)
GCCAGAGCTTTTGCGAACTTCAACA
LOC_Os07g12300
OsAffx.16226.1.S1_at--824--5911Chr07:6918212..6918236 (25 bp)
GAGCTTTTGCGAACTTCAACATCGA
LOC_Os07g12300
OsAffx.16226.1.S1_at--790--10271Chr07:6918217..6918241 (25 bp)
TTTGCGAACTTCAACATCGACAGAG
LOC_Os07g12300
OsAffx.16226.1.S1_at--441--7692Chr07:6918280..6918304 (25 bp)
GGGTATGTCTCTCTCCTACTGTCGT
LOC_Os07g12300
OsAffx.16226.1.S1_at--433--8732Chr07:6918285..6918309 (25 bp)
TGTCTCTCTCCTACTGTCGTTCATA
LOC_Os07g12300
OsAffx.16226.1.S1_at--55--9932Chr07:6918296..6918320 (25 bp)
TACTGTCGTTCATACCTCTGTTTGT
LOC_Os07g12300
OsAffx.16226.1.S1_at--596--4032Chr07:6918302..6918326 (25 bp)
CGTTCATACCTCTGTTTGTTCTGTT
LOC_Os07g12300
OsAffx.16226.1.S1_at--897--3871Chr07:6918313..6918337 (25 bp)
CTGTTTGTTCTGTTGGTCGCATTGC
LOC_Os07g12300
OsAffx.16226.1.S1_at--874--10791Chr07:6918317..6918341 (25 bp)
TTGTTCTGTTGGTCGCATTGCGTTC
LOC_Os07g12300
Target Sequence 
TCTGGGAGCCAGAGCTTTTGCGAACTTCAACATCGACAGAGGCAGTTCTGCCTTACAATCCAGCGGAGGGCCATTCTCGG
GGTATGTCTCTCTCCTACTGTCGTTCATACCTCTGTTTGTTCTGTTGGTCGCATTGCGTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16226.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis