Browse Element(s) Details


OsAffx.16321.1.S1_x_at

Description tigr:9635.m01833
TID=OsAffx.16321.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1818011/11hypothetical protein
LOC_Os10g014908/11hypothetical protein
LOC_Os03g043501/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18154OsAffx.28504.1.S1_at11/117+10747051..10759138FAD binding domain in molybdopterin dehydrogenase family protein, expressed
LOC_Os07g18154Os.27021.1.S1_x_at11/117+10747051..10759138FAD binding domain in molybdopterin dehydrogenase family protein, expressed
LOC_Os07g18154Os.27021.1.S1_at10/117+10747051..10759138FAD binding domain in molybdopterin dehydrogenase family protein, expressed
LOC_Os07g18170OsAffx.6544.1.S1_at5/117+10767890..10771400transposon protein, putative, unclassified
LOC_Os07g18170OsAffx.18951.1.S1_at1/117+10767890..10771400transposon protein, putative, unclassified
LOC_Os07g18180OsAffx.16321.1.S1_x_at11/117+10773676..10774242hypothetical protein
LOC_Os07g18180Os.25910.1.S1_s_at1/117+10773676..10774242hypothetical protein
LOC_Os07g18190OsAffx.22722.1.S1_at1/117+10779075..10786151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18190OsAffx.22722.1.S1_x_at1/117+10779075..10786151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18200OsAffx.20565.1.S1_at1/117+10787259..10790011retrotransposon protein, putative, unclassified
LOC_Os07g18210Os.47463.1.S1_x_at6/117+10793724..10798721transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18210Os.14491.2.S1_x_at5/117+10793724..10798721transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16321.1.S1_x_at--708--1771Chr07:10773906..10773930 (25 bp)
ACCGGCCCAAGCTTGCAGGCGCCAG
LOC_Os07g18180
OsAffx.16321.1.S1_x_at--409--2711Chr07:10773898..10773922 (25 bp)
AAGCTTGCAGGCGCCAGCCGGATCT
LOC_Os07g18180
OsAffx.16321.1.S1_x_at--498--3631Chr07:10773895..10773919 (25 bp)
CTTGCAGGCGCCAGCCGGATCTGGA
LOC_Os07g18180
OsAffx.16321.1.S1_x_at--1126--4252Chr10:301754..301778 (25 bp)
CCGGATCTGGAGCTCCTAGGCGGAT
LOC_Os10g01490
OsAffx.16321.1.S1_x_at--355--492Chr10:301758..301782 (25 bp)
ATCTGGAGCTCCTAGGCGGATCCGG
LOC_Os10g01490
OsAffx.16321.1.S1_x_at--140--1812Chr10:301789..301813 (25 bp)
ACCGCCAGATCTGGCTTTGGTGATG
LOC_Os10g01490
OsAffx.16321.1.S1_x_at--654--4352Chr10:301793..301817 (25 bp)
CCAGATCTGGCTTTGGTGATGATTT
LOC_Os10g01490
OsAffx.16321.1.S1_x_at--957--3432Chr10:301794..301818 (25 bp)
CAGATCTGGCTTTGGTGATGATTTT
LOC_Os10g01490
OsAffx.16321.1.S1_x_at--328--6412Chr10:301796..301820 (25 bp)
GATCTGGCTTTGGTGATGATTTTTT
LOC_Os10g01490
OsAffx.16321.1.S1_x_at--48--3912Chr10:301799..301823 (25 bp)
CTGGCTTTGGTGATGATTTTTTTGA
LOC_Os10g01490
OsAffx.16321.1.S1_x_at--920--10554Chr10:301898..301922 (25 bp)
TTCTTGTGATTCTGTTTTGTGTCCA
LOC_Os10g01490
Target Sequence 
ACCGGCCCAAGCTTGCAGGCGCCAGCCGGATCTGGAGCTCCTAGGCGGATCCGGGCCCCAACCGCCAGATCTGGCTTTGG
TGATGATTTTTTTGATTTTGTTTTGTGCCCAAATGATTGTGAATGTGAAGTGATTTTGTTCTTTGGCCAGATGAATATGA
TTGTGATGTTTCTTGTGATTCTGTTTTGTGTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16321.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis