Browse Element(s) Details


OsAffx.18951.1.S1_at

Description tigr:9639.m01859
TID=OsAffx.18951.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=O-methyltransferase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1988011/11O-methyltransferase family protein
LOC_Os07g181701/11transposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19830NANA11+11399898..11406083retrotransposon protein, putative, unclassified
LOC_Os11g19840Os.51165.1.S1_at11/1111+11408235..11410602O-methyltransferase family protein, expressed
LOC_Os11g19850OsAffx.27041.1.S1_at11/1111+11411720..11412553hypothetical protein
LOC_Os11g19864Os.39725.1.S1_at6/1111+11414591..11423902transposon protein, putative, Pong sub-class, expressed
LOC_Os11g19864Os.19740.1.S2_at2/1111+11414591..11423902transposon protein, putative, Pong sub-class, expressed
LOC_Os11g19880OsAffx.18951.1.S1_at11/1111+11429353..11434183O-methyltransferase family protein
LOC_Os11g19880Os.7111.1.S1_x_at1/1111+11429353..11434183O-methyltransferase family protein
LOC_Os11g19880OsAffx.19757.1.S1_at1/1111+11429353..11434183O-methyltransferase family protein
LOC_Os11g19890NANA11+11435892..11436745expressed protein
LOC_Os11g19900NANA11+11439658..11439858hypothetical protein
LOC_Os11g19910OsAffx.22385.1.S1_x_at3/1111+11440926..11445339retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g19910OsAffx.20329.1.S1_at1/1111+11440926..11445339retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g19920NANA11+11445687..11446532hypothetical protein
LOC_Os11g19930NANA11+11450070..11452237hypothetical protein
LOC_Os11g19940OsAffx.20387.1.S1_x_at1/1111+11452532..11455172retrotransposon protein, putative, unclassified
LOC_Os11g19950OsAffx.21161.1.S1_at2/1111+11455425..11460215retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005829cellular_componentcytosol
GO:0008171molecular_functionO-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18951.1.S1_at--549--10531Chr11:11431013..11431037 (25 bp)
TTCAGGGCCACTTCTAGAAGCCCAA
LOC_Os11g19880
OsAffx.18951.1.S1_at--227--711Chr11:11430933..11430957 (25 bp)
ATGAGTGGCGTGATCTATTCAAGAC
LOC_Os11g19880
OsAffx.18951.1.S1_at--348--5011Chr11:11430907..11430931 (25 bp)
GCAGGCACAGCAGGCTTCAGTGACT
LOC_Os11g19880
OsAffx.18951.1.S1_at--872--8071Chr11:11430863..11430887 (25 bp)
GGAGCTCGAGCTATATTTGAGGTCT
LOC_Os11g19880
OsAffx.18951.1.S1_at--476--8891Chr11:11430846..11430870 (25 bp)
TGAGGTCTATCGATCCCAAGCAGTG
LOC_Os11g19880
OsAffx.18951.1.S1_at--921--4371Chr11:11430831..11430855 (25 bp)
CCAAGCAGTGCTCCCAAATACTATT
LOC_Os11g19880
OsAffx.18951.1.S1_at--64--6071Chr11:11430803..11430827 (25 bp)
GAGTGGGTTTCCTCTATCACTACTA
LOC_Os11g19880
OsAffx.18951.1.S1_at--1028--911Chr11:11429566..11429590 (25 bp)
AGGCTACTCACTACCTAAGGTCGTT
LOC_Os11g19880
OsAffx.18951.1.S1_at--477--6751Chr11:11429544..11429568 (25 bp)
GTTATGACCGGTTCCCGCGCTATTA
LOC_Os11g19880
OsAffx.18951.1.S1_at--702--4131Chr11:11429529..11429553 (25 bp)
CGCGCTATTACCGACTTCAGGAGGA
LOC_Os11g19880
OsAffx.18951.1.S1_at--1090--6333Chr11:11429471..11429495 (25 bp)
GATGCTATGGAGGATCTCCACCCTC
LOC_Os11g19880
Target Sequence 
TTCAGGGCCACTTCTAGAAGCCCAACTCCTCATCAATGTGGTTATGATGGTCGTAACCAAAGGTCGACAGCGAGATGAAA
ATGAGTGGCGTGATCTATTCAAGACAGCAGGCACAGCAGGCTTCAGTGACTATAAGATTGTGAAGAACTGGGAGCTCGAG
CTATATTTGAGGTCTATCGATCCCAAGCAGTGCTCCCAAATACTATTATTGAGTGGGTTTCCTCTATCACTACTAGGAAA
ATGTTTCGCATACGAGGGGCCAACATGGGAGTCTACTGGAGAAAGCTGGGGCCAGAAGAGCCAGCAAGGGGTCGGCCGAC
CCACCACTGAGCCCAATCAGCCCCCATCTTACACAGGCTACTCACTACCTAAGGTCGTTATGACCGGTTCCCGCGCTATT
ACCGACTTCAGGAGGACAGATGGCATGAGGAGAAGGAAGATGTTCGTTGGATGCTATGGAGGATCTCCACCCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18951.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis