Browse Element(s) Details


Os.7111.1.S1_x_at

Description gb:AK106228.1
DB_XREF= gi:32991437
TID=Os.7111.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.7111 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-100-A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-100-A11, full insert sequence.
FL= gb:AK106228.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g344108/11U-box domain containing protein, expressed
LOC_Os11g198801/11O-methyltransferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34370OsAffx.12347.1.S1_at8/112+20556665..20559796expressed protein
LOC_Os02g34370OsAffx.12347.2.S1_at3/112+20556665..20559796expressed protein
LOC_Os02g34370OsAffx.27834.1.S1_at1/112+20556665..20559796expressed protein
LOC_Os02g34380OsAffx.15850.1.S1_at1/112+20566402..20569165retrotransposon protein, putative, LINE subclass
LOC_Os02g34390OsAffx.2860.1.S1_at11/112+20570095..20571876hypothetical protein
LOC_Os02g34400NANA2+20579734..20580303hypothetical protein
LOC_Os02g34410Os.7111.1.S1_x_at8/112+20582460..20583804U-box domain containing protein, expressed
LOC_Os02g34419NANA2+20597283..20597556NA

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005829cellular_componentcytosol
GO:0008171molecular_functionO-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7111.1.S1_x_at--579--4511Chr01:20828496..20828520 (25 bp)
GCCGATGTGATCGATCTCTCCAGCG
NONE
Os.7111.1.S1_x_at--708--8851Chr01:20828489..20828513 (25 bp)
TGATCGATCTCTCCAGCGACGACGA
NONE
Os.7111.1.S1_x_at--223--1871NONE
ACGACGACGAGGTGCGCGCTGGTGC
NONE
Os.7111.1.S1_x_at--458--7971Chr02:20582644..20582668 (25 bp)
GGATCGGAGCCGCTCCAGGTGGAGG
LOC_Os02g34410
Os.7111.1.S1_x_at--603--693Chr12:5306..5573 (25 bp)
ATGAGCCAGCTCCTCCTCATGGTGC
NONE
Os.7111.1.S1_x_at--545--1591Chr02:20582595..20582619 (25 bp)
AGCTCCTCCTCATGGTGCAGGGCGG
LOC_Os02g34410
Os.7111.1.S1_x_at--167--2691Chr02:20582554..20582578 (25 bp)
AAGCGGAAGGCGCAGCACCTGCTCA
LOC_Os02g34410
Os.7111.1.S1_x_at--154--5292Chr11:11433382..11433862 (25 bp)
GAAGGCGCAGCACCTGCTCAAGCTG
LOC_Os11g19880
Os.7111.1.S1_x_at--256--9091Chr02:20582535..20582559 (25 bp)
TGCTCAAGCTGCTCCGGTCGGCGTG
LOC_Os02g34410
Os.7111.1.S1_x_at--313--2631Chr02:20582469..20582493 (25 bp)
AACCATACTAACAACCGCCATTGCG
LOC_Os02g34410
Os.7111.1.S1_x_at--40--9831Chr02:20582461..20582485 (25 bp)
TAACAACCGCCATTGCGGCCGGCGG
LOC_Os02g34410
Target Sequence 
GCCGATGTGATCGATCTCTCCAGCGACGACGACGACGAGGTGCGCGCTGGTGCGCGCCATGTCCGGGCGGTCAGCGGAGC
ACGCGGCGGGGGCGCTGGTGGCGGTGGTGGGCGGATCGGAGCCGCTCCAGGTGGAGGCGGTCCGCGCGGGCGCCATGAGC
CAGCTCCTCCTCATGGTGCAGGGCGGGTGCTCGGAGCGGGCGAAGCGGAAGGCGCAGCACCTGCTCAAGCTGCTCCGGTC
GGCGTGGCCCGCCGCCGACTCCATCGCCAACTCCGACGACTTCCTCCAACCATACTAACAACCGCCATTGCGGCCGGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7111.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis