Browse Element(s) Details


OsAffx.12347.2.S1_at

Description tigr:9630.m03270
TID=OsAffx.12347.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3436011/11hypothetical protein
LOC_Os02g343703/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34320OsAffx.24568.1.S1_at10/112+20529453..20532881Helix-loop-helix DNA-binding domain containing protein
LOC_Os02g34330OsAffx.32166.1218.S1_x_at3/112+20536289..20537643hypothetical protein
LOC_Os02g34340OsAffx.22699.1.S1_x_at1/112+20539250..20541612retrotransposon protein, putative, unclassified
LOC_Os02g34340OsAffx.8201.1.S1_x_at1/112+20539250..20541612retrotransposon protein, putative, unclassified
LOC_Os02g34350NANA2+20543527..20548844Zinc knuckle family protein
LOC_Os02g34360OsAffx.12347.2.S1_at11/112+20550887..20551627hypothetical protein
LOC_Os02g34370OsAffx.12347.1.S1_at8/112+20556665..20559796expressed protein
LOC_Os02g34370OsAffx.12347.2.S1_at3/112+20556665..20559796expressed protein
LOC_Os02g34370OsAffx.27834.1.S1_at1/112+20556665..20559796expressed protein
LOC_Os02g34380OsAffx.15850.1.S1_at1/112+20566402..20569165retrotransposon protein, putative, LINE subclass
LOC_Os02g34390OsAffx.2860.1.S1_at11/112+20570095..20571876hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12347.2.S1_at--795--8932Chr02:20551461..20551485 (25 bp)
TGACGTCGCTGAGCATGTTCATGTT
LOC_Os02g34360
OsAffx.12347.2.S1_at--494--4011Chr02:20551464..20551488 (25 bp)
CGTCGCTGAGCATGTTCATGTTCAT
LOC_Os02g34360
OsAffx.12347.2.S1_at--471--3511Chr02:20551486..20551510 (25 bp)
CATGTTCTACACTATCGTGAGTACC
LOC_Os02g34360
OsAffx.12347.2.S1_at--1147--10571Chr02:20551490..20551514 (25 bp)
TTCTACACTATCGTGAGTACCATCT
LOC_Os02g34360
OsAffx.12347.2.S1_at--855--3711Chr02:20551492..20551516 (25 bp)
CTACACTATCGTGAGTACCATCTCT
LOC_Os02g34360
OsAffx.12347.2.S1_at--245--451Chr02:20551511..20551535 (25 bp)
ATCTCTCCCCTTCGTTTATTTAGAG
LOC_Os02g34360
OsAffx.12347.2.S1_at--127--3811Chr02:20551515..20551539 (25 bp)
CTCCCCTTCGTTTATTTAGAGATAG
LOC_Os02g34360
OsAffx.12347.2.S1_at--747--10032Chr02:20557909..20557933 (25 bp)
TAGAGATAGTAGTTTGCAATGCAAG
LOC_Os02g34370
OsAffx.12347.2.S1_at--823--3191Chr02:20551547..20551571 (25 bp)
CAATGCAAGCGGCTATATATGTATA
LOC_Os02g34360
OsAffx.12347.2.S1_at--952--4691Chr02:20551555..20551579 (25 bp)
GCGGCTATATATGTATAGATCCACA
LOC_Os02g34360
OsAffx.12347.2.S1_at--466--10192Chr02:20557946..20557970 (25 bp)
TATAGATCCACAAGAATGGGAGCAC
LOC_Os02g34370
Target Sequence 
TGACGTCGCTGAGCATGTTCATGTTCATGTTCTACACTATCGTGAGTACCATCTCTCCCCTTCGTTTATTTAGAGATAGT
AGTTTGCAATGCAAGCGGCTATATATGTATAGATCCACAAGAATGGGAGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12347.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis