Browse Element(s) Details


OsAffx.12347.1.S1_at

Description tigr:9630.m03271
TID=OsAffx.12347.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g343708/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34320OsAffx.24568.1.S1_at10/112+20529453..20532881Helix-loop-helix DNA-binding domain containing protein
LOC_Os02g34330OsAffx.32166.1218.S1_x_at3/112+20536289..20537643hypothetical protein
LOC_Os02g34340OsAffx.22699.1.S1_x_at1/112+20539250..20541612retrotransposon protein, putative, unclassified
LOC_Os02g34340OsAffx.8201.1.S1_x_at1/112+20539250..20541612retrotransposon protein, putative, unclassified
LOC_Os02g34350NANA2+20543527..20548844Zinc knuckle family protein
LOC_Os02g34360OsAffx.12347.2.S1_at11/112+20550887..20551627hypothetical protein
LOC_Os02g34370OsAffx.12347.1.S1_at8/112+20556665..20559796expressed protein
LOC_Os02g34370OsAffx.12347.2.S1_at3/112+20556665..20559796expressed protein
LOC_Os02g34370OsAffx.27834.1.S1_at1/112+20556665..20559796expressed protein
LOC_Os02g34380OsAffx.15850.1.S1_at1/112+20566402..20569165retrotransposon protein, putative, LINE subclass
LOC_Os02g34390OsAffx.2860.1.S1_at11/112+20570095..20571876hypothetical protein
LOC_Os02g34400NANA2+20579734..20580303hypothetical protein
LOC_Os02g34410Os.7111.1.S1_x_at8/112+20582460..20583804U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12347.1.S1_at--1068--1931Chr02:20557811..20557835 (25 bp)
ACGGCAGTGACGTCGCTGAGCGGGA
LOC_Os02g34370
OsAffx.12347.1.S1_at--611--8911Chr02:20557827..20557851 (25 bp)
TGAGCGGGACCGACGCTTCCCGGAC
LOC_Os02g34370
OsAffx.12347.1.S1_at--612--10631Chr02:20557843..20557867 (25 bp)
TTCCCGGACCCAGAACATGTTCATG
LOC_Os02g34370
OsAffx.12347.1.S1_at--797--4191Chr02:20557845..20557869 (25 bp)
CCCGGACCCAGAACATGTTCATGTT
LOC_Os02g34370
OsAffx.12347.1.S1_at--359--6731NONE
GTTCTACACTATTATCGATATGCCG
NONE
OsAffx.12347.1.S1_at--811--9851NONE
TACACTATTATCGATATGCCGGACA
NONE
OsAffx.12347.1.S1_at--490--2031NONE
ACTATTATCGATATGCCGGACAGGC
NONE
OsAffx.12347.1.S1_at--531--6491Chr02:20559695..20559719 (25 bp)
GATATGCCGGACAGGCAGCCCCAGT
LOC_Os02g34370
OsAffx.12347.1.S1_at--977--5651Chr02:20559704..20559728 (25 bp)
GACAGGCAGCCCCAGTTTGTGCACC
LOC_Os02g34370
OsAffx.12347.1.S1_at--546--4351Chr02:20559715..20559739 (25 bp)
CCAGTTTGTGCACCCCAAGGTGTTC
LOC_Os02g34370
OsAffx.12347.1.S1_at--909--8791Chr02:20559735..20559759 (25 bp)
TGTTCGAGGCCATGTACAGAGCGGC
LOC_Os02g34370
Target Sequence 
ACGGCAGTGACGTCGCTGAGCGGGACCGACGCTTCCCGGACCCAGAACATGTTCATGTTCTACACTATTATCGATATGCC
GGACAGGCAGCCCCAGTTTGTGCACCCCAAGGTGTTCGAGGCCATGTACAGAGCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12347.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis