Browse Element(s) Details


OsAffx.2860.1.S1_at

Description tigr:9630.m03273
TID=OsAffx.2860.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3439011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g34350NANA2+20543527..20548844Zinc knuckle family protein
LOC_Os02g34360OsAffx.12347.2.S1_at11/112+20550887..20551627hypothetical protein
LOC_Os02g34370OsAffx.12347.1.S1_at8/112+20556665..20559796expressed protein
LOC_Os02g34370OsAffx.12347.2.S1_at3/112+20556665..20559796expressed protein
LOC_Os02g34370OsAffx.27834.1.S1_at1/112+20556665..20559796expressed protein
LOC_Os02g34380OsAffx.15850.1.S1_at1/112+20566402..20569165retrotransposon protein, putative, LINE subclass
LOC_Os02g34390OsAffx.2860.1.S1_at11/112+20570095..20571876hypothetical protein
LOC_Os02g34400NANA2+20579734..20580303hypothetical protein
LOC_Os02g34410Os.7111.1.S1_x_at8/112+20582460..20583804U-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2860.1.S1_at--230--3751Chr02:20570576..20570600 (25 bp)
CTCAGCGCCCCTCCATGGTGGATGG
LOC_Os02g34390
OsAffx.2860.1.S1_at--51--5771Chr02:20570512..20570536 (25 bp)
GACGTCCGTGTCTGCATCTGCTGCT
LOC_Os02g34390
OsAffx.2860.1.S1_at--1067--851Chr02:20570469..20570493 (25 bp)
ATGGCTGCCGCTATTGGGCACGAGT
LOC_Os02g34390
OsAffx.2860.1.S1_at--1025--10211Chr02:20570458..20570482 (25 bp)
TATTGGGCACGAGTCTGGACCGACT
LOC_Os02g34390
OsAffx.2860.1.S1_at--975--8391Chr02:20570373..20570397 (25 bp)
GGCGCGGAGATCTTGTTCGACATGC
LOC_Os02g34390
OsAffx.2860.1.S1_at--936--4051Chr02:20570338..20570362 (25 bp)
CGAGGAGATCTTGTTCGACATGCCG
LOC_Os02g34390
OsAffx.2860.1.S1_at--16--5671Chr02:20570322..20570346 (25 bp)
GACATGCCGATTCTCGCTCTTGATC
LOC_Os02g34390
OsAffx.2860.1.S1_at--236--9591Chr02:20570305..20570329 (25 bp)
TCTTGATCTCGACGGCCAGCCGATG
LOC_Os02g34390
OsAffx.2860.1.S1_at--919--9431Chr02:20570262..20570286 (25 bp)
TCGGTCGTGCAGAACGCCGCTCTTC
LOC_Os02g34390
OsAffx.2860.1.S1_at--1002--9171Chr02:20570144..20570168 (25 bp)
TGCCGAAGCGCAGCAAGTGGATTGC
LOC_Os02g34390
OsAffx.2860.1.S1_at--770--2871Chr02:20570130..20570154 (25 bp)
AAGTGGATTGCTGCCCACATCGCGC
LOC_Os02g34390
Target Sequence 
CTCAGCGCCCCTCCATGGTGGATGGGCCGGTGATGGGAGAGGGGGCTCCGACGTCTCCTTCGCCGACGTCCGTGTCTGCA
TCTGCTGCTGGGGATGAGGCCCCGGCCATGGCTGCCGCTATTGGGCACGAGTCTGGACCGACTGTGGGAGAGGGGGCTGC
GTGGCTAGCGGCCGTGGCAGTCCCTCCTTCCCCTGTGGCTGATGGCGCGGAGATCTTGTTCGACATGCCGGTTGGTGGCG
AGGAGATCTTGTTCGACATGCCGATTCTCGCTCTTGATCTCGACGGCCAGCCGATGGCGTGCTCACTGCCTCCCTCGGTC
GTGCAGAACGCCGCTCTTCGCGCCATCCTCGCCAGCTGCTGCAAGCCTCTCTGTCCTGCGCCGCATACTCCCCCCGCGCC
TATGGCACCTACCGTCGCGGCCGTGGGAGTGGTGCCGAAGCGCAGCAAGTGGATTGCTGCCCACATCGCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2860.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis