Browse Element(s) Details


Os.39725.1.S1_at

Description gb:CA763989
DB_XREF= gi:27545794
DB_XREF=AF53-Rpf_01D_D10_T7.ab1
CLONE=C0000082
TID=Os.39725.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.39725 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g198646/11transposon protein, putative, Pong sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19810OsAffx.18950.1.S1_x_at11/1111+11389141..11393774PWWP domain containing protein, expressed
LOC_Os11g19810OsAffx.18950.1.S1_s_at11/1111+11389141..11393774PWWP domain containing protein, expressed
LOC_Os11g19810Os.21437.1.S1_s_at11/1111+11389141..11393774PWWP domain containing protein, expressed
LOC_Os11g19810Os.21437.1.S1_at10/1111+11389141..11393774PWWP domain containing protein, expressed
LOC_Os11g19820Os.46995.1.S1_x_at4/1111+11396643..11399505retrotransposon protein, putative, unclassified
LOC_Os11g19820Os.46995.1.S1_at3/1111+11396643..11399505retrotransposon protein, putative, unclassified
LOC_Os11g19830NANA11+11399898..11406083retrotransposon protein, putative, unclassified
LOC_Os11g19840Os.51165.1.S1_at11/1111+11408235..11410602O-methyltransferase family protein, expressed
LOC_Os11g19850OsAffx.27041.1.S1_at11/1111+11411720..11412553hypothetical protein
LOC_Os11g19864Os.39725.1.S1_at6/1111+11414591..11423902transposon protein, putative, Pong sub-class, expressed
LOC_Os11g19864Os.19740.1.S2_at2/1111+11414591..11423902transposon protein, putative, Pong sub-class, expressed
LOC_Os11g19880OsAffx.18951.1.S1_at11/1111+11429353..11434183O-methyltransferase family protein
LOC_Os11g19880Os.7111.1.S1_x_at1/1111+11429353..11434183O-methyltransferase family protein
LOC_Os11g19880OsAffx.19757.1.S1_at1/1111+11429353..11434183O-methyltransferase family protein
LOC_Os11g19890NANA11+11435892..11436745expressed protein
LOC_Os11g19900NANA11+11439658..11439858hypothetical protein
LOC_Os11g19910OsAffx.22385.1.S1_x_at3/1111+11440926..11445339retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g19910OsAffx.20329.1.S1_at1/1111+11440926..11445339retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g19920NANA11+11445687..11446532hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39725.1.S1_at--1072--10351Chr11:11421346..11421370 (25 bp)
TTTTCAGAGTCCATTAGATGTTCTT
LOC_Os11g19864
Os.39725.1.S1_at--1019--10311Chr11:11421345..11421369 (25 bp)
TTTCAGAGTCCATTAGATGTTCTTG
LOC_Os11g19864
Os.39725.1.S1_at--6--10531Chr11:11421344..11421368 (25 bp)
TTCAGAGTCCATTAGATGTTCTTGC
LOC_Os11g19864
Os.39725.1.S1_at--409--9691NONE
TACAGTTAAATATGGTCGGTTTCCG
NONE
Os.39725.1.S1_at--736--10831NONE
TTGGGACCCGACAATGGCGCGATGC
NONE
Os.39725.1.S1_at--315--8111NONE
GGACCCGACAATGGCGCGATGCGCA
NONE
Os.39725.1.S1_at--1121--5811NONE
GACCCGACAATGGCGCGATGCGCAT
NONE
Os.39725.1.S1_at--165--4111NONE
CGACAATGGCGCGATGCGCATGGTC
NONE
Os.39725.1.S1_at--480--5611Chr11:11421020..11421043 (24 bp)
GACAATGGCGCGATGCGCATGGTCA
LOC_Os11g19864
Os.39725.1.S1_at--632--2231Chr11:11421019..11421043 (25 bp)
ACAATGGCGCGATGCGCATGGTCAG
LOC_Os11g19864
Os.39725.1.S1_at--53--3211Chr11:11421019..11421042 (24 bp)
CAATGGCGCGATGCGCATGGTCAGG
LOC_Os11g19864
Target Sequence 
TTTTCAGAGTCCATTAGATGTTCTTGCCGAAGTCAGGAGTTCANTCACATAAGTTAATTCCCTTTTTACTTAATCTTCAA
GTCTAGGTTATTTACATGGTTTAAGTCTATAGTAAAACAACAGAGTTAGGTCNTTCTAAAACTTCTGCTGTAATAGTTAG
CCACAATCTCGTAAATACCCTATTACTTTATGTAATAATATCTTCTTCAAAGCTATGTCTAAACGTATGCAAAGACGATC
CAGATTGTTGAAGCTGTATCAACTTACTAATCCAGGGCTTGATACAGTTAAATATGGTCGGTTTCCGAATCATTAGTTTT
GGGACCCGACAATGGCGCGATGCGCATGGTCAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39725.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis