Browse Element(s) Details


Os.21437.1.S1_at

Description gb:AK068734.1
DB_XREF= gi:32978753
TID=Os.21437.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21437 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013159G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013159G04, full insert sequence.
FL= gb:AK068734.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1981010/11PWWP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19770NANA11+11369451..11370238Argininosuccinate synthase, chloroplast precursor, putative
LOC_Os11g19780OsAffx.18948.1.S1_at11/1111+11373383..11374708O-methyltransferase ZRP4, putative
LOC_Os11g19780Os.55345.1.S1_at1/1111+11373383..11374708O-methyltransferase ZRP4, putative
LOC_Os11g19790OsAffx.18949.1.S1_at11/1111+11380615..11381951O-methyltransferase family protein
LOC_Os11g19800Os.46324.1.S1_at9/1111+11386131..11388863expressed protein
LOC_Os11g19800OsAffx.31068.1.S1_at9/1111+11386131..11388863expressed protein
LOC_Os11g19810OsAffx.18950.1.S1_x_at11/1111+11389141..11393774PWWP domain containing protein, expressed
LOC_Os11g19810OsAffx.18950.1.S1_s_at11/1111+11389141..11393774PWWP domain containing protein, expressed
LOC_Os11g19810Os.21437.1.S1_s_at11/1111+11389141..11393774PWWP domain containing protein, expressed
LOC_Os11g19810Os.21437.1.S1_at10/1111+11389141..11393774PWWP domain containing protein, expressed
LOC_Os11g19820Os.46995.1.S1_x_at4/1111+11396643..11399505retrotransposon protein, putative, unclassified
LOC_Os11g19820Os.46995.1.S1_at3/1111+11396643..11399505retrotransposon protein, putative, unclassified
LOC_Os11g19830NANA11+11399898..11406083retrotransposon protein, putative, unclassified
LOC_Os11g19840Os.51165.1.S1_at11/1111+11408235..11410602O-methyltransferase family protein, expressed
LOC_Os11g19850OsAffx.27041.1.S1_at11/1111+11411720..11412553hypothetical protein
LOC_Os11g19864Os.39725.1.S1_at6/1111+11414591..11423902transposon protein, putative, Pong sub-class, expressed
LOC_Os11g19864Os.19740.1.S2_at2/1111+11414591..11423902transposon protein, putative, Pong sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21437.1.S1_at--921--3351Chr11:11389490..11389514 (25 bp)
CACCTGTTGAACCTGTTGATACTCG
LOC_Os11g19810
Os.21437.1.S1_at--279--1751Chr11:11389489..11389513 (25 bp)
ACCTGTTGAACCTGTTGATACTCGG
LOC_Os11g19810
Os.21437.1.S1_at--119--3871Chr11:11389487..11389511 (25 bp)
CTGTTGAACCTGTTGATACTCGGTG
LOC_Os11g19810
Os.21437.1.S1_at--443--6651Chr11:11389485..11389509 (25 bp)
GTTGAACCTGTTGATACTCGGTGAG
LOC_Os11g19810
Os.21437.1.S1_at--273--8991Chr11:11389483..11389507 (25 bp)
TGAACCTGTTGATACTCGGTGAGGT
LOC_Os11g19810
Os.21437.1.S1_at--21--2631NONE
AACCTGTTGATACTCGGTGAGGTGA
NONE
Os.21437.1.S1_at--497--5291Chr11:11389347..11389371 (25 bp)
GAAGGAGCTGAGTTAGTCAGAAAAA
LOC_Os11g19810
Os.21437.1.S1_at--784--10791Chr11:11389304..11389328 (25 bp)
TTGTTACAGGATTAAGCATTCATAG
LOC_Os11g19810
Os.21437.1.S1_at--409--2131Chr11:11389299..11389323 (25 bp)
ACAGGATTAAGCATTCATAGGAACA
LOC_Os11g19810
Os.21437.1.S1_at--673--7931Chr11:11389296..11389320 (25 bp)
GGATTAAGCATTCATAGGAACAAAA
LOC_Os11g19810
Os.21437.1.S1_at--779--3571Chr11:11389284..11389308 (25 bp)
CATAGGAACAAAAGGTTGTGCATTT
LOC_Os11g19810
Target Sequence 
CACCTGTTGAACCTGTTGATACTCGGTGAGGTGAAGGAGCTGAGTTAGTCAGAAAAATGTCTGTTANGNNGGTAGATTGT
TACAGGATTAAGCATTCATAGGAACAAAAGGTTGTGCATTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21437.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis