Browse Element(s) Details


Os.46324.1.S1_at

Description gb:AK099876.1
DB_XREF= gi:32985085
TID=Os.46324.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.46324 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013111H14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013111H14, full insert sequence.
FL= gb:AK099876.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g198009/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19760OsAffx.31067.1.S1_at11/1111+11360832..11361489hypothetical protein
LOC_Os11g19770NANA11+11369451..11370238Argininosuccinate synthase, chloroplast precursor, putative
LOC_Os11g19780OsAffx.18948.1.S1_at11/1111+11373383..11374708O-methyltransferase ZRP4, putative
LOC_Os11g19780Os.55345.1.S1_at1/1111+11373383..11374708O-methyltransferase ZRP4, putative
LOC_Os11g19790OsAffx.18949.1.S1_at11/1111+11380615..11381951O-methyltransferase family protein
LOC_Os11g19800Os.46324.1.S1_at9/1111+11386131..11388863expressed protein
LOC_Os11g19800OsAffx.31068.1.S1_at9/1111+11386131..11388863expressed protein
LOC_Os11g19810OsAffx.18950.1.S1_x_at11/1111+11389141..11393774PWWP domain containing protein, expressed
LOC_Os11g19810OsAffx.18950.1.S1_s_at11/1111+11389141..11393774PWWP domain containing protein, expressed
LOC_Os11g19810Os.21437.1.S1_s_at11/1111+11389141..11393774PWWP domain containing protein, expressed
LOC_Os11g19810Os.21437.1.S1_at10/1111+11389141..11393774PWWP domain containing protein, expressed
LOC_Os11g19820Os.46995.1.S1_x_at4/1111+11396643..11399505retrotransposon protein, putative, unclassified
LOC_Os11g19820Os.46995.1.S1_at3/1111+11396643..11399505retrotransposon protein, putative, unclassified
LOC_Os11g19830NANA11+11399898..11406083retrotransposon protein, putative, unclassified
LOC_Os11g19840Os.51165.1.S1_at11/1111+11408235..11410602O-methyltransferase family protein, expressed
LOC_Os11g19850OsAffx.27041.1.S1_at11/1111+11411720..11412553hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0000226biological_processmicrotubule cytoskeleton organization and biogenesis
GO:0000902biological_processcellular morphogenesis
GO:0009860biological_processpollen tube growth
GO:0040007biological_processgrowth
GO:0005634cellular_componentnucleus
GO:0005730cellular_componentnucleolus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0005886cellular_componentplasma membrane
GO:0009524cellular_componentphragmoplast
GO:0030427cellular_componentsite of polarized growth
GO:0003924molecular_functionGTPase activity
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.46324.1.S1_at--349--4411Chr11:11387920..11388028 (25 bp)
GCCACTGTTGATAAATGGTCTTATG
LOC_Os11g19800
Os.46324.1.S1_at--509--9831Chr11:11388058..11388352 (25 bp)
TAAACAGCTTAAGGAACCCTGGTGG
LOC_Os11g19800
Os.46324.1.S1_at--308--391Chr11:11388554..11388578 (25 bp)
ATCAGATTGTTACACCTGTCCTGTC
LOC_Os11g19800
Os.46324.1.S1_at--403--1772Chr11:11388567..11388591 (25 bp)
ACCTGTCCTGTCCACGAGATTGCAT
LOC_Os11g19800
Os.46324.1.S1_at--152--1872Chr11:11388580..11388604 (25 bp)
ACGAGATTGCATCCATCCAGAAGGG
LOC_Os11g19800
Os.46324.1.S1_at--427--5933Chr11:11388613..11388637 (25 bp)
GAGCATCAAGGCATTTTTGGCAAAT
LOC_Os11g19800
Os.46324.1.S1_at--1070--8912Chr11:11388653..11388677 (25 bp)
TGAGCGTGGCATTTACCAATCCATT
LOC_Os11g19800
Os.46324.1.S1_at--469--9731Chr11:11388712..11388736 (25 bp)
TCAAGTTCATGTTACTCGGTGCATT
LOC_Os11g19800
Os.46324.1.S1_at--787--3511Chr11:11388719..11388743 (25 bp)
CATGTTACTCGGTGCATTGTTCATA
LOC_Os11g19800
Os.46324.1.S1_at--881--8651Chr11:11388867..11388891 (25 bp)
TGTGGCAAAGCTTGTTTAACTGACT
NONE
Os.46324.1.S1_at--694--2551Chr11:11388884..11388908 (25 bp)
AACTGACTATTGTCTTTGTAACAAA
NONE
Target Sequence 
GCCACTGTTGATAAATGGTCTTATGGAAGCAACACTATCTCATGCTCGTTCACCTAAACAGCTTAAGGAACCCTGGTGGC
CTACCAAATTGGCTTGGCAATGTAGTAGTCTCTGTTGCCATTGCTATTGTCATATGTTTTACCTGTGTGTATCTTCTTTC
TTACGTTCATATATCAGATTGTTACACCTGTCCTGTCCACGAGATTGCATCCATCCAGAAGGGAATGAAAAGAGCATCAA
GGCATTTTTGGCAAATTATTGATTTTGTTCTTGAGCGTGGCATTTACCAATCCATTATATATATATTGGTTTTATTACAG
TACAAAGAAATCAAGTTCATGTTACTCGGTGCATTGTTCATACAGATGTATAAAAATGTTGGTGTGATGTGGCAATTTGA
GCAATATTGGACCTTGCTTCTTATGGCATTCCAGTTGGCTGATGATTGCAGTTACATGTTGATGGCATCCTTATATGTGT
AGTTATGTGGCAAAGCTTGTTTAACTGACTATTGTCTTTGTAACAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.46324.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis