Browse Element(s) Details


OsAffx.18950.1.S1_x_at

Description tigr:9639.m01850
TID=OsAffx.18950.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=PWWP domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1981011/11PWWP domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19770NANA11+11369451..11370238Argininosuccinate synthase, chloroplast precursor, putative
LOC_Os11g19780OsAffx.18948.1.S1_at11/1111+11373383..11374708O-methyltransferase ZRP4, putative
LOC_Os11g19780Os.55345.1.S1_at1/1111+11373383..11374708O-methyltransferase ZRP4, putative
LOC_Os11g19790OsAffx.18949.1.S1_at11/1111+11380615..11381951O-methyltransferase family protein
LOC_Os11g19800Os.46324.1.S1_at9/1111+11386131..11388863expressed protein
LOC_Os11g19800OsAffx.31068.1.S1_at9/1111+11386131..11388863expressed protein
LOC_Os11g19810OsAffx.18950.1.S1_x_at11/1111+11389141..11393774PWWP domain containing protein, expressed
LOC_Os11g19810OsAffx.18950.1.S1_s_at11/1111+11389141..11393774PWWP domain containing protein, expressed
LOC_Os11g19810Os.21437.1.S1_s_at11/1111+11389141..11393774PWWP domain containing protein, expressed
LOC_Os11g19810Os.21437.1.S1_at10/1111+11389141..11393774PWWP domain containing protein, expressed
LOC_Os11g19820Os.46995.1.S1_x_at4/1111+11396643..11399505retrotransposon protein, putative, unclassified
LOC_Os11g19820Os.46995.1.S1_at3/1111+11396643..11399505retrotransposon protein, putative, unclassified
LOC_Os11g19830NANA11+11399898..11406083retrotransposon protein, putative, unclassified
LOC_Os11g19840Os.51165.1.S1_at11/1111+11408235..11410602O-methyltransferase family protein, expressed
LOC_Os11g19850OsAffx.27041.1.S1_at11/1111+11411720..11412553hypothetical protein
LOC_Os11g19864Os.39725.1.S1_at6/1111+11414591..11423902transposon protein, putative, Pong sub-class, expressed
LOC_Os11g19864Os.19740.1.S2_at2/1111+11414591..11423902transposon protein, putative, Pong sub-class, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18950.1.S1_x_at--100--1671Chr11:11390068..11390092 (25 bp)
AGCCCTTGGCTGATCATATGCAGGA
LOC_Os11g19810
OsAffx.18950.1.S1_x_at--445--6551Chr11:11390042..11390066 (25 bp)
GATTATTGGGCTGACATTCTGATTA
LOC_Os11g19810
OsAffx.18950.1.S1_x_at--854--8011Chr11:11390013..11390037 (25 bp)
GGAGGAACCACTGTCTAGTCTCAGA
LOC_Os11g19810
OsAffx.18950.1.S1_x_at--686--1931Chr11:11389808..11389832 (25 bp)
ACGGAAAGTTCCTCATTTGCTGGAC
LOC_Os11g19810
OsAffx.18950.1.S1_x_at--217--10291Chr11:11389793..11389817 (25 bp)
TTTGCTGGACTAGTGCTGCACTTCA
LOC_Os11g19810
OsAffx.18950.1.S1_x_at--1084--1031Chr11:11389761..11389785 (25 bp)
AGGTGCTGTTCCGTCACGCAGTGAC
LOC_Os11g19810
OsAffx.18950.1.S1_x_at--635--431Chr11:11389727..11389751 (25 bp)
ATCTTTAGCCAATATGGACCCGTCA
LOC_Os11g19810
OsAffx.18950.1.S1_x_at--587--8091Chr11:11389712..11389736 (25 bp)
GGACCCGTCAATGAAGCCAAGGCAG
LOC_Os11g19810
OsAffx.18950.1.S1_x_at--898--3271Chr11:11389681..11389705 (25 bp)
CAAACAATGCTAACTGCGCTCAGGT
LOC_Os11g19810
OsAffx.18950.1.S1_x_at--877--2551Chr11:11389670..11389694 (25 bp)
AACTGCGCTCAGGTGATCTTCAAGA
LOC_Os11g19810
OsAffx.18950.1.S1_x_at--765--5051Chr11:11389628..11389652 (25 bp)
GCAGCATTTGCAGGCGCAGGGAAAA
LOC_Os11g19810
Target Sequence 
AGCCCTTGGCTGATCATATGCAGGATGATTATTGGGCTGACATTCTGATTAATGTGGAGGAACCACTGTCTAGTCTCAGA
AAAAAGAAAGATAAGGGTGTGAACAGAACAAGAAAGAAGGAACATGTTAAAAAACCTGCCATGAAATCATCATCACTGGG
AAATATAGAGGGACCAACTGTTGAAGGTTCAGAGAACAAGCAACCGAATGCAGAAACACAACTGAGTGTTGCAAATGGAA
CTAAAGTAAGTTCTGAAGAAACGGAAAGTTCCTCATTTGCTGGACTAGTGCTGCACTTCAGCAGGCCAGGTGCTGTTCCG
TCACGCAGTGACCTTATCAAAATCTTTAGCCAATATGGACCCGTCAATGAAGCCAAGGCAGAGACTGCAAACAATGCTAA
CTGCGCTCAGGTGATCTTCAAGAGGCGCATGGATGCTGAGGCAGCATTTGCAGGCGCAGGGAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18950.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis