Browse Element(s) Details


Os.51165.1.S1_at

Description gb:AK061247.1
DB_XREF= gi:32971265
TID=Os.51165.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51165 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-211-E05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-211-E05, full insert sequence.
FL= gb:AK061247.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1984011/11O-methyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19800Os.46324.1.S1_at9/1111+11386131..11388863expressed protein
LOC_Os11g19800OsAffx.31068.1.S1_at9/1111+11386131..11388863expressed protein
LOC_Os11g19810OsAffx.18950.1.S1_x_at11/1111+11389141..11393774PWWP domain containing protein, expressed
LOC_Os11g19810OsAffx.18950.1.S1_s_at11/1111+11389141..11393774PWWP domain containing protein, expressed
LOC_Os11g19810Os.21437.1.S1_s_at11/1111+11389141..11393774PWWP domain containing protein, expressed
LOC_Os11g19810Os.21437.1.S1_at10/1111+11389141..11393774PWWP domain containing protein, expressed
LOC_Os11g19820Os.46995.1.S1_x_at4/1111+11396643..11399505retrotransposon protein, putative, unclassified
LOC_Os11g19820Os.46995.1.S1_at3/1111+11396643..11399505retrotransposon protein, putative, unclassified
LOC_Os11g19830NANA11+11399898..11406083retrotransposon protein, putative, unclassified
LOC_Os11g19840Os.51165.1.S1_at11/1111+11408235..11410602O-methyltransferase family protein, expressed
LOC_Os11g19850OsAffx.27041.1.S1_at11/1111+11411720..11412553hypothetical protein
LOC_Os11g19864Os.39725.1.S1_at6/1111+11414591..11423902transposon protein, putative, Pong sub-class, expressed
LOC_Os11g19864Os.19740.1.S2_at2/1111+11414591..11423902transposon protein, putative, Pong sub-class, expressed
LOC_Os11g19880OsAffx.18951.1.S1_at11/1111+11429353..11434183O-methyltransferase family protein
LOC_Os11g19880Os.7111.1.S1_x_at1/1111+11429353..11434183O-methyltransferase family protein
LOC_Os11g19880OsAffx.19757.1.S1_at1/1111+11429353..11434183O-methyltransferase family protein

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Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005829cellular_componentcytosol
GO:0008171molecular_functionO-methyltransferase activity
GO:0047763molecular_functioncaffeate O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51165.1.S1_at--1015--9351Chr11:11409844..11409868 (25 bp)
TCGAGGCGTTCCCACATATCAAGTG
LOC_Os11g19840
Os.51165.1.S1_at--152--6611Chr11:11409795..11409819 (25 bp)
GATTGGCAATAAACGCGGTGATGGT
LOC_Os11g19840
Os.51165.1.S1_at--805--9991Chr11:11409757..11409781 (25 bp)
TAGCGGGTGACATGTTCCGCGCCAT
LOC_Os11g19840
Os.51165.1.S1_at--51--7071Chr11:11408670..11408694 (25 bp)
GTAAGAAAGCTATTCCAGCCCGCAA
LOC_Os11g19840
Os.51165.1.S1_at--361--91Chr11:11408659..11408683 (25 bp)
ATTCCAGCCCGCAAAGATGGAGGGA
LOC_Os11g19840
Os.51165.1.S1_at--787--10051Chr11:11408616..11408640 (25 bp)
TAGTGATTGGAGCTCCTTCTGGACC
LOC_Os11g19840
Os.51165.1.S1_at--595--10611Chr11:11408600..11408624 (25 bp)
TTCTGGACCACTACTGGAAGCCCAA
LOC_Os11g19840
Os.51165.1.S1_at--772--3711Chr11:11408590..11408614 (25 bp)
CTACTGGAAGCCCAACTCCTTATGG
LOC_Os11g19840
Os.51165.1.S1_at--680--1371Chr11:11408458..11408482 (25 bp)
AGAGCTCGAGCTGTCTTTGAGGTCT
LOC_Os11g19840
Os.51165.1.S1_at--769--6151Chr11:11408440..11408464 (25 bp)
GAGGTCTATCCGTAGGGTGCTCCTA
LOC_Os11g19840
Os.51165.1.S1_at--441--7771Chr11:11408425..11408449 (25 bp)
GGTGCTCCTAAATACCATGGAGGAT
LOC_Os11g19840
Target Sequence 
TCGAGGCGTTCCCACATATCAAGTGCACCGTGCTGGACTTTCCCCGGGTGATTGGCAATAAACGCGGTGATGGTGTGGTG
AACTATGTAGCGGGTGACATGTTCCGCGCCATCCCACCTGCTCAAGCTGTCATGCTCAAGCTTGTGCTTCACCACTGGAG
TGACGAGGATTGTGTGAAAATACTAACTCAATGTAAGAAAGCTATTCCAGCCCGCAAAGATGGAGGGAAGGTGATCATCA
TTGACATAGTGATTGGAGCTCCTTCTGGACCACTACTGGAAGCCCAACTCCTTATGGATGTGGGTATGATGGTGGCGACC
AAAGGCCGACAGCGAGACGAAAATGACTGGCGTGATCTCTTCAAGAAAGCAGGCTTCAATAACTATAAGATTGTGAAAAA
ATTGAGAGCTCGAGCTGTCTTTGAGGTCTATCCGTAGGGTGCTCCTAAATACCATGGAGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51165.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis