Browse Element(s) Details


Os.19740.1.S2_at

Description gb:AK121692.1
DB_XREF= gi:37991315
TID=Os.19740.1
CNT=15
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.19740 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-155-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033071L01, full insert sequence.
FL= gb:AK121692.1 gb:AK109113.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g198642/11transposon protein, putative, Pong sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g19810OsAffx.18950.1.S1_x_at11/1111+11389141..11393774PWWP domain containing protein, expressed
LOC_Os11g19810OsAffx.18950.1.S1_s_at11/1111+11389141..11393774PWWP domain containing protein, expressed
LOC_Os11g19810Os.21437.1.S1_s_at11/1111+11389141..11393774PWWP domain containing protein, expressed
LOC_Os11g19810Os.21437.1.S1_at10/1111+11389141..11393774PWWP domain containing protein, expressed
LOC_Os11g19820Os.46995.1.S1_x_at4/1111+11396643..11399505retrotransposon protein, putative, unclassified
LOC_Os11g19820Os.46995.1.S1_at3/1111+11396643..11399505retrotransposon protein, putative, unclassified
LOC_Os11g19830NANA11+11399898..11406083retrotransposon protein, putative, unclassified
LOC_Os11g19840Os.51165.1.S1_at11/1111+11408235..11410602O-methyltransferase family protein, expressed
LOC_Os11g19850OsAffx.27041.1.S1_at11/1111+11411720..11412553hypothetical protein
LOC_Os11g19864Os.39725.1.S1_at6/1111+11414591..11423902transposon protein, putative, Pong sub-class, expressed
LOC_Os11g19864Os.19740.1.S2_at2/1111+11414591..11423902transposon protein, putative, Pong sub-class, expressed
LOC_Os11g19880OsAffx.18951.1.S1_at11/1111+11429353..11434183O-methyltransferase family protein
LOC_Os11g19880Os.7111.1.S1_x_at1/1111+11429353..11434183O-methyltransferase family protein
LOC_Os11g19880OsAffx.19757.1.S1_at1/1111+11429353..11434183O-methyltransferase family protein
LOC_Os11g19890NANA11+11435892..11436745expressed protein
LOC_Os11g19900NANA11+11439658..11439858hypothetical protein
LOC_Os11g19910OsAffx.22385.1.S1_x_at3/1111+11440926..11445339retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g19910OsAffx.20329.1.S1_at1/1111+11440926..11445339retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g19920NANA11+11445687..11446532hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19740.1.S2_at--447--4898Chr07:13890433..13890457 (25 bp)
GCTTTCTTCCTCTATATTCTTTGCT
NONE
Os.19740.1.S2_at--857--3676Chr07:13890434..13890458 (25 bp)
CTTTCTTCCTCTATATTCTTTGCTT
NONE
Os.19740.1.S2_at--295--10336Chr07:13890435..13890459 (25 bp)
TTTCTTCCTCTATATTCTTTGCTTT
NONE
Os.19740.1.S2_at--1152--10556Chr12:22994182..22994201 (20 bp)
TTCTTCCTCTATATTCTTTGCTTTC
NONE
Os.19740.1.S2_at--971--9575Chr07:13890437..13890461 (25 bp)
TCTTCCTCTATATTCTTTGCTTTCT
NONE
Os.19740.1.S2_at--908--3635Chr07:13890438..13890462 (25 bp)
CTTCCTCTATATTCTTTGCTTTCTG
NONE
Os.19740.1.S2_at--472--10675Chr07:13890439..13890463 (25 bp)
TTCCTCTATATTCTTTGCTTTCTGC
NONE
Os.19740.1.S2_at--1142--9256Chr12:22994182..22994205 (24 bp)
TCCTCTATATTCTTTGCTTTCTGCA
NONE
Target Sequence 
GCTTTCTTCCTCTATATTCTTTGCTTTCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19740.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis