Browse Element(s) Details


OsAffx.28504.1.S1_at

Description tigr:9635.m01829
TID=OsAffx.28504.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1815411/11FAD binding domain in molybdopterin dehydrogenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18120Os.18981.1.S1_at11/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.18981.1.S1_x_at11/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120OsAffx.28501.1.S1_x_at11/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.57307.1.S1_at11/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.27021.1.S1_x_at4/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120OsAffx.28501.2.S1_x_at2/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.50754.1.A1_x_at1/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.27021.1.S1_at1/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18130OsAffx.28502.1.S1_at11/117+10737453..10742218hypothetical protein
LOC_Os07g18140OsAffx.28503.1.S1_at11/117+10742802..10743391hypothetical protein
LOC_Os07g18154OsAffx.28504.1.S1_at11/117+10747051..10759138FAD binding domain in molybdopterin dehydrogenase family protein, expressed
LOC_Os07g18154Os.27021.1.S1_x_at11/117+10747051..10759138FAD binding domain in molybdopterin dehydrogenase family protein, expressed
LOC_Os07g18154Os.27021.1.S1_at10/117+10747051..10759138FAD binding domain in molybdopterin dehydrogenase family protein, expressed
LOC_Os07g18170OsAffx.6544.1.S1_at5/117+10767890..10771400transposon protein, putative, unclassified
LOC_Os07g18170OsAffx.18951.1.S1_at1/117+10767890..10771400transposon protein, putative, unclassified
LOC_Os07g18180OsAffx.16321.1.S1_x_at11/117+10773676..10774242hypothetical protein
LOC_Os07g18180Os.25910.1.S1_s_at1/117+10773676..10774242hypothetical protein
LOC_Os07g18190OsAffx.22722.1.S1_at1/117+10779075..10786151retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18190OsAffx.22722.1.S1_x_at1/117+10779075..10786151retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009688biological_processabscisic acid biosynthesis
GO:0009851biological_processauxin biosynthesis
GO:0004031molecular_functionaldehyde oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28504.1.S1_at--363--4731Chr07:10747365..10747389 (25 bp)
GCTGTGGAGAAGGTATACCCTATGT
LOC_Os07g18154
OsAffx.28504.1.S1_at--390--5512Chr07:10747437..10747461 (25 bp)
GAAAATTTCCAATTGGTTGAGCATC
LOC_Os07g18154
OsAffx.28504.1.S1_at--1026--8571Chr07:10747450..10747474 (25 bp)
TGGTTGAGCATCGTGATTCCGTATA
LOC_Os07g18154
OsAffx.28504.1.S1_at--715--7372Chr07:10747462..10747486 (25 bp)
GTGATTCCGTATAAGTGGTACCGTT
LOC_Os07g18154
OsAffx.28504.1.S1_at--566--1031Chr07:10747475..10747499 (25 bp)
AGTGGTACCGTTTTAGTGCCGTATG
LOC_Os07g18154
OsAffx.28504.1.S1_at--457--7291Chr07:10747490..10747514 (25 bp)
GTGCCGTATGTTTTAGATGCCACGA
LOC_Os07g18154
OsAffx.28504.1.S1_at--381--6351Chr07:10747505..10747529 (25 bp)
GATGCCACGAAATAGTTAACCCGAC
LOC_Os07g18154
OsAffx.28504.1.S1_at--965--251Chr07:10747516..10747540 (25 bp)
ATAGTTAACCCGACGAATATGATTA
LOC_Os07g18154
OsAffx.28504.1.S1_at--815--251Chr07:10747532..10747556 (25 bp)
ATATGATTAACTTTTGACCGACTGA
LOC_Os07g18154
OsAffx.28504.1.S1_at--603--5811Chr07:10747547..10747571 (25 bp)
GACCGACTGAAGAATCGTTTCCGTA
LOC_Os07g18154
OsAffx.28504.1.S1_at--860--5291Chr07:10747555..10747579 (25 bp)
GAAGAATCGTTTCCGTAGGGATATT
LOC_Os07g18154
Target Sequence 
GCTGTGGAGAAGGTATACCCTATGTATATGTTATTATGTACTACATCATCTATCTTGGATGAAAACAGTCACGAAAATTT
CCAATTGGTTGAGCATCGTGATTCCGTATAAGTGGTACCGTTTTAGTGCCGTATGTTTTAGATGCCACGAAATAGTTAAC
CCGACGAATATGATTAACTTTTGACCGACTGAAGAATCGTTTCCGTAGGGATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28504.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis