Browse Element(s) Details


Os.57307.1.S1_at

Description gb:AK111275.1
DB_XREF= gi:32996484
TID=Os.57307.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57307 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-180-G07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-180-G07, full insert sequence.
FL= gb:AK111275.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1812011/11Aldehyde oxidase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18090Os.14491.2.S1_x_at3/117+10698912..10704024transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18090Os.47463.1.S1_x_at3/117+10698912..10704024transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18100OsAffx.31780.3.S1_at9/117+10708905..10711013hypothetical protein
LOC_Os07g18100OsAffx.31780.2.S1_x_at1/117+10708905..10711013hypothetical protein
LOC_Os07g18110OsAffx.16320.1.S1_at11/117+10714746..10716928hypothetical protein
LOC_Os07g18110OsAffx.30891.1.S1_x_at3/117+10714746..10716928hypothetical protein
LOC_Os07g18110OsAffx.12244.1.S1_at1/117+10714746..10716928hypothetical protein
LOC_Os07g18120Os.18981.1.S1_at11/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.18981.1.S1_x_at11/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120OsAffx.28501.1.S1_x_at11/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.57307.1.S1_at11/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.27021.1.S1_x_at4/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120OsAffx.28501.2.S1_x_at2/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.50754.1.A1_x_at1/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.27021.1.S1_at1/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18130OsAffx.28502.1.S1_at11/117+10737453..10742218hypothetical protein
LOC_Os07g18140OsAffx.28503.1.S1_at11/117+10742802..10743391hypothetical protein
LOC_Os07g18154OsAffx.28504.1.S1_at11/117+10747051..10759138FAD binding domain in molybdopterin dehydrogenase family protein, expressed
LOC_Os07g18154Os.27021.1.S1_x_at11/117+10747051..10759138FAD binding domain in molybdopterin dehydrogenase family protein, expressed
LOC_Os07g18154Os.27021.1.S1_at10/117+10747051..10759138FAD binding domain in molybdopterin dehydrogenase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009688biological_processabscisic acid biosynthesis
GO:0009851biological_processauxin biosynthesis
GO:0004031molecular_functionaldehyde oxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57307.1.S1_at--629--2351Chr07:10725228..10725252 (25 bp)
AAAGCTGATTGTATTTTGTCGCACA
LOC_Os07g18120
Os.57307.1.S1_at--853--2231Chr07:10725269..10725293 (25 bp)
AAATTCGATCAGTTGGGACAGCTTG
LOC_Os07g18120
Os.57307.1.S1_at--163--5651Chr07:10725285..10725309 (25 bp)
GACAGCTTGAGATTGGTCATCAGAT
LOC_Os07g18120
Os.57307.1.S1_at--825--10351Chr07:10725315..10725339 (25 bp)
TTTTTCTTTGCAAACGGATCCAGAG
LOC_Os07g18120
Os.57307.1.S1_at--594--7971Chr07:10725330..10725354 (25 bp)
GGATCCAGAGGTAACGTATCATTTG
LOC_Os07g18120
Os.57307.1.S1_at--158--431Chr07:10725347..10725371 (25 bp)
ATCATTTGTGATCGTGCATGTGACA
LOC_Os07g18120
Os.57307.1.S1_at--645--9051Chr07:10725361..10725385 (25 bp)
TGCATGTGACATGCTCCTGTGCCAT
LOC_Os07g18120
Os.57307.1.S1_at--614--3811Chr07:10725374..10725398 (25 bp)
CTCCTGTGCCATGTGTGTGATGTGT
LOC_Os07g18120
Os.57307.1.S1_at--807--8671Chr07:10725389..10725413 (25 bp)
TGTGATGTGTCGATAATGGCCCTTT
LOC_Os07g18120
Os.57307.1.S1_at--409--9351Chr07:10725398..10725422 (25 bp)
TCGATAATGGCCCTTTTTCCGTTGG
LOC_Os07g18120
Os.57307.1.S1_at--766--10291Chr07:10725413..10725437 (25 bp)
TTTCCGTTGGACTTTCAGTGCATGT
LOC_Os07g18120
Target Sequence 
AAAGCTGATTGTATTTTGTCGCACAAGGGGCAAACAAAAGCAAATTCGATCAGTTGGGACAGCTTGAGATTGGTCATCAG
ATGCAATTTTTTCTTTGCAAACGGATCCAGAGGTAACGTATCATTTGTGATCGTGCATGTGACATGCTCCTGTGCCATGT
GTGTGATGTGTCGATAATGGCCCTTTTTCCGTTGGACTTTCAGTGCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57307.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis