Browse Element(s) Details


OsAffx.31780.3.S1_at

Description tigr:9635.m01824
TID=OsAffx.31780.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g181009/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18060Os.35344.18.S1_x_at11/117+10682319..10688366transposon protein, putative, Mutator sub-class
LOC_Os07g18060Os.35344.3.S1_x_at9/117+10682319..10688366transposon protein, putative, Mutator sub-class
LOC_Os07g18060OsAffx.22940.5.S1_x_at3/117+10682319..10688366transposon protein, putative, Mutator sub-class
LOC_Os07g18070Os.50491.1.S1_at10/117+10691581..10692164expressed protein
LOC_Os07g18080NANA7+10694155..10697460transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18090Os.14491.2.S1_x_at3/117+10698912..10704024transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18090Os.47463.1.S1_x_at3/117+10698912..10704024transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18100OsAffx.31780.3.S1_at9/117+10708905..10711013hypothetical protein
LOC_Os07g18100OsAffx.31780.2.S1_x_at1/117+10708905..10711013hypothetical protein
LOC_Os07g18110OsAffx.16320.1.S1_at11/117+10714746..10716928hypothetical protein
LOC_Os07g18110OsAffx.30891.1.S1_x_at3/117+10714746..10716928hypothetical protein
LOC_Os07g18110OsAffx.12244.1.S1_at1/117+10714746..10716928hypothetical protein
LOC_Os07g18120Os.18981.1.S1_at11/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.18981.1.S1_x_at11/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120OsAffx.28501.1.S1_x_at11/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.57307.1.S1_at11/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.27021.1.S1_x_at4/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120OsAffx.28501.2.S1_x_at2/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.50754.1.A1_x_at1/117+10723045..10736324Aldehyde oxidase 3, putative, expressed
LOC_Os07g18120Os.27021.1.S1_at1/117+10723045..10736324Aldehyde oxidase 3, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31780.3.S1_at--80--5091Chr07:10710959..10710983 (25 bp)
GCACCGCCCTCTAATGGGAGGCGCA
LOC_Os07g18100
OsAffx.31780.3.S1_at--467--4531Chr07:10710954..10710978 (25 bp)
GCCCTCTAATGGGAGGCGCATCCGG
LOC_Os07g18100
OsAffx.31780.3.S1_at--154--9771Chr07:10710948..10710972 (25 bp)
TAATGGGAGGCGCATCCGGCCACCG
LOC_Os07g18100
OsAffx.31780.3.S1_at--486--6031NONE
GAGATGAGGCCAGGCGTGCACATCA
NONE
OsAffx.31780.3.S1_at--662--691NONE
ATGAGGCCAGGCGTGCACATCATCA
NONE
OsAffx.31780.3.S1_at--753--7331Chr07:10709210..10709234 (25 bp)
GTGCACATCATCATGAGATCTTTTG
LOC_Os07g18100
OsAffx.31780.3.S1_at--1108--3551Chr07:10709205..10709229 (25 bp)
CATCATCATGAGATCTTTTGGTCCT
LOC_Os07g18100
OsAffx.31780.3.S1_at--1118--3551Chr07:10709202..10709226 (25 bp)
CATCATGAGATCTTTTGGTCCTAAC
LOC_Os07g18100
OsAffx.31780.3.S1_at--111--9631Chr07:10709200..10709224 (25 bp)
TCATGAGATCTTTTGGTCCTAACTA
LOC_Os07g18100
OsAffx.31780.3.S1_at--798--6031Chr07:10709196..10709220 (25 bp)
GAGATCTTTTGGTCCTAACTATGAT
LOC_Os07g18100
OsAffx.31780.3.S1_at--420--3671Chr07:10709191..10709215 (25 bp)
CTTTTGGTCCTAACTATGATCCATT
LOC_Os07g18100
Target Sequence
GCACCGCCCTCTAATGGGAGGCGCATCCGGCCACCGGAGATGAGGCCAGGCGTGCACATCATCATGAGATCTTTTGGTCC
TAACTATGATCCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31780.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis