Browse Element(s) Details


Os.50491.1.S1_at

Description gb:AK121421.1
DB_XREF= gi:37991044
TID=Os.50491.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50491 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023133M08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023133M08, full insert sequence.
FL= gb:AK121421.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1807010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18030NANA7+10670514..10672843hypothetical protein
LOC_Os07g18040OsAffx.28499.1.S1_at11/117+10676316..10676555hypothetical protein
LOC_Os07g18050Os.5565.1.S1_at11/117+10676958..10681396RNA recognition motif family protein, expressed
LOC_Os07g18060Os.35344.18.S1_x_at11/117+10682319..10688366transposon protein, putative, Mutator sub-class
LOC_Os07g18060Os.35344.3.S1_x_at9/117+10682319..10688366transposon protein, putative, Mutator sub-class
LOC_Os07g18060OsAffx.22940.5.S1_x_at3/117+10682319..10688366transposon protein, putative, Mutator sub-class
LOC_Os07g18070Os.50491.1.S1_at10/117+10691581..10692164expressed protein
LOC_Os07g18080NANA7+10694155..10697460transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18090Os.14491.2.S1_x_at3/117+10698912..10704024transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18090Os.47463.1.S1_x_at3/117+10698912..10704024transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18100OsAffx.31780.3.S1_at9/117+10708905..10711013hypothetical protein
LOC_Os07g18100OsAffx.31780.2.S1_x_at1/117+10708905..10711013hypothetical protein
LOC_Os07g18110OsAffx.16320.1.S1_at11/117+10714746..10716928hypothetical protein
LOC_Os07g18110OsAffx.30891.1.S1_x_at3/117+10714746..10716928hypothetical protein
LOC_Os07g18110OsAffx.12244.1.S1_at1/117+10714746..10716928hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50491.1.S1_at--1070--7191Chr07:10692054..10692078 (25 bp)
GTCGTCCAAGCCGAGCATCCTGATT
LOC_Os07g18070
Os.50491.1.S1_at--1078--1531Chr07:10692041..10692065 (25 bp)
AGCATCCTGATTCCCGTGGCGGACA
LOC_Os07g18070
Os.50491.1.S1_at--946--8551Chr07:10691965..10691989 (25 bp)
TGGAGGACATGGAAGCTGCGCCCTT
LOC_Os07g18070
Os.50491.1.S1_at--95--4271Chr07:10691806..10691830 (25 bp)
CCGGCGTCTTTGCATTCTAAATGTG
LOC_Os07g18070
Os.50491.1.S1_at--758--7471Chr07:10691780..10691804 (25 bp)
GTGTGTCCGTGAGATGGCATGCATC
LOC_Os07g18070
Os.50491.1.S1_at--825--9831Chr07:10691744..10691768 (25 bp)
TAAACCGTAGTGTGAGTGTGCATGC
LOC_Os07g18070
Os.50491.1.S1_at--450--7311Chr07:10691727..10691751 (25 bp)
GTGCATGCGCGGTTAAAAAGGATTC
LOC_Os07g18070
Os.50491.1.S1_at--720--10131Chr07:10691697..10691721 (25 bp)
TATGCTGACATTTCTGTAGCTTTAT
LOC_Os07g18070
Os.50491.1.S1_at--546--3671Chr07:10691678..10691702 (25 bp)
CTTTATTATATGCATGTCCTCTGTT
LOC_Os07g18070
Os.50491.1.S1_at--986--9231Chr07:10691646..10691670 (25 bp)
TCCTTTTTAGTTACCTTAGCTGAAG
LOC_Os07g18070
Os.50491.1.S1_at--173--6811Chr07:10691581..10691605 (25 bp)
GTTTTGACTAATACATCGTGCCCGC
NONE
Target Sequence 
GTCGTCCAAGCCGAGCATCCTGATTCCCGTGGCGGACACCCCGCTCGGCTCGTACGAGGGCGCCGACGGGCCCATCGCCG
ACGACGCCCTGGAGGACATGGAAGCTGCGCCCTTGGGCTCGCCCATCGGCACCACCATGACCGAACCTGAGCCGGAGCTC
CCGGCCAACGCGCCCCCTAGCTCCGCTGGTGCCACCGCTTCTTCTACACCCACGACCCTACTTGCCGCCGCTGTCATGGC
CGCTGTCGCCGGCGTCTTTGCATTCTAAATGTGTGTGTGTCCGTGAGATGGCATGCATCTAAATGGAAATTAAACCGTAG
TGTGAGTGTGCATGCGCGGTTAAAAAGGATTCGAATTTATGCTGACATTTCTGTAGCTTTATTATATGCATGTCCTCTGT
TTTTTTTTTCCTTTTTAGTTACCTTAGCTGAAGAATGCATGATGTGCTGGGAATGTATTATGTGTGCATGCAAGTTTTGA
CTAATACATCGTGCCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50491.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis