Browse Element(s) Details


OsAffx.28499.1.S1_at

Description tigr:9635.m01818
TID=OsAffx.28499.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1804011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g18000NANA7+10650795..10653043Zinc knuckle family protein
LOC_Os07g18010NANA7+10655339..10655860retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g18020NANA7+10661154..10662257hypothetical protein
LOC_Os07g18030NANA7+10670514..10672843hypothetical protein
LOC_Os07g18040OsAffx.28499.1.S1_at11/117+10676316..10676555hypothetical protein
LOC_Os07g18050Os.5565.1.S1_at11/117+10676958..10681396RNA recognition motif family protein, expressed
LOC_Os07g18060Os.35344.18.S1_x_at11/117+10682319..10688366transposon protein, putative, Mutator sub-class
LOC_Os07g18060Os.35344.3.S1_x_at9/117+10682319..10688366transposon protein, putative, Mutator sub-class
LOC_Os07g18060OsAffx.22940.5.S1_x_at3/117+10682319..10688366transposon protein, putative, Mutator sub-class
LOC_Os07g18070Os.50491.1.S1_at10/117+10691581..10692164expressed protein
LOC_Os07g18080NANA7+10694155..10697460transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18090Os.14491.2.S1_x_at3/117+10698912..10704024transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g18090Os.47463.1.S1_x_at3/117+10698912..10704024transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28499.1.S1_at--808--9151Chr07:10676350..10676374 (25 bp)
TGCGCATCACGCAGGCGGACCCGAA
LOC_Os07g18040
OsAffx.28499.1.S1_at--1006--371Chr07:10676355..10676379 (25 bp)
ATCACGCAGGCGGACCCGAATGGTG
LOC_Os07g18040
OsAffx.28499.1.S1_at--120--9691Chr07:10676356..10676380 (25 bp)
TCACGCAGGCGGACCCGAATGGTGT
LOC_Os07g18040
OsAffx.28499.1.S1_at--286--3951Chr07:10676365..10676389 (25 bp)
CGGACCCGAATGGTGTGGCGTTCAT
LOC_Os07g18040
OsAffx.28499.1.S1_at--439--7971Chr07:10676366..10676390 (25 bp)
GGACCCGAATGGTGTGGCGTTCATC
LOC_Os07g18040
OsAffx.28499.1.S1_at--549--4191Chr07:10676369..10676393 (25 bp)
CCCGAATGGTGTGGCGTTCATCCAC
LOC_Os07g18040
OsAffx.28499.1.S1_at--27--4231Chr07:10676370..10676394 (25 bp)
CCGAATGGTGTGGCGTTCATCCACG
LOC_Os07g18040
OsAffx.28499.1.S1_at--596--9231Chr07:10676410..10676434 (25 bp)
TCCTCAAGATGCTCACGGGGAAGCT
LOC_Os07g18040
OsAffx.28499.1.S1_at--293--5411Chr07:10676429..10676453 (25 bp)
GAAGCTGCCGGCAAACACGGTGCCG
LOC_Os07g18040
OsAffx.28499.1.S1_at--727--2691Chr07:10676430..10676454 (25 bp)
AAGCTGCCGGCAAACACGGTGCCGG
LOC_Os07g18040
OsAffx.28499.1.S1_at--298--911Chr07:10676501..10676525 (25 bp)
AGTGGATGGGCGAGGTGTTAGACGC
LOC_Os07g18040
Target Sequence 
TGCGCATCACGCAGGCGGACCCGAATGGTGTGGCGTTCATCCACGGCGACGGCGTGGTGCTCCTCAAGATGCTCACGGGG
AAGCTGCCGGCAAACACGGTGCCGGGGTTCGACGGCGTCGACCTGTCGCAGTGGGTGCGCCGTGGTGCAGGAGTGGATGG
GCGAGGTGTTAGACGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28499.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis