Browse Element(s) Details


OsAffx.16427.1.S1_at

Description tigr:9635.m02573
TID=OsAffx.16427.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g2671011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g26700Os.18694.1.S1_at11/117+15420165..15423516Brain protein 44, putative, expressed
LOC_Os07g26700Os.10664.1.S1_at1/117+15420165..15423516Brain protein 44, putative, expressed
LOC_Os07g26710OsAffx.16427.1.S1_at11/117+15433836..15434484hypothetical protein
LOC_Os07g26720OsAffx.22367.1.S1_at11/117+15439195..15440486response regulator, putative, expressed
LOC_Os07g26730OsAffx.28605.1.S1_at11/117+15442249..15445052hypothetical protein
LOC_Os07g26740Os.6267.1.S1_at11/117+15447167..1544971760S ribosomal protein L44, putative, expressed
LOC_Os07g26750OsAffx.16428.1.S1_at11/117+15450256..15450810expressed protein
LOC_Os07g26760OsAffx.28606.1.S1_x_at11/117+15458078..15458469hypothetical protein
LOC_Os07g26760OsAffx.28606.1.S1_at11/117+15458078..15458469hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16427.1.S1_at--657--7631Chr07:15433866..15433887 (22 bp)
GGGAGTTGTTTCTATTATCGAACGG
LOC_Os07g26710
OsAffx.16427.1.S1_at--816--91Chr07:15433879..15434191 (25 bp)
ATTATCGAACGGTAGTTAGTCATGG
LOC_Os07g26710
OsAffx.16427.1.S1_at--235--6771Chr07:15434181..15434205 (25 bp)
GTTAGTCATGGAAGAGGCCTAAACC
LOC_Os07g26710
OsAffx.16427.1.S1_at--263--6171Chr07:15434194..15434218 (25 bp)
GAGGCCTAAACCATGTAACTGTTGA
LOC_Os07g26710
OsAffx.16427.1.S1_at--500--9791Chr07:15434209..15434233 (25 bp)
TAACTGTTGATCGAAAATGGAGGAC
LOC_Os07g26710
OsAffx.16427.1.S1_at--152--5571Chr07:15434240..15434264 (25 bp)
GAAAGCAATGGCAAACTTTGTCTTT
LOC_Os07g26710
OsAffx.16427.1.S1_at--549--8691Chr07:15434258..15434282 (25 bp)
TGTCTTTGGCCCCTCAAAGGCAGAT
LOC_Os07g26710
OsAffx.16427.1.S1_at--76--10871Chr07:15434263..15434287 (25 bp)
TTGGCCCCTCAAAGGCAGATGATGT
LOC_Os07g26710
OsAffx.16427.1.S1_at--761--3431Chr07:15434278..15434302 (25 bp)
CAGATGATGTGAACCCTGGTTGGAC
LOC_Os07g26710
OsAffx.16427.1.S1_at--498--4271Chr07:15434292..15434313 (22 bp)
CCTGGTTGGACTACCTTCACTGAAA
LOC_Os07g26710
OsAffx.16427.1.S1_at--565--8571Chr07:15434294..15434389 (25 bp)
TGGTTGGACTACCTTCACTGAAAAT
LOC_Os07g26710
Target Sequence 
GGGAGTTGTTTCTATTATCGAACGGTAGTTAGTCATGGAAGAGGCCTAAACCATGTAACTGTTGATCGAAAATGGAGGAC
GTGGATGAAAGCAATGGCAAACTTTGTCTTTGGCCCCTCAAAGGCAGATGATGTGAACCCTGGTTGGACTACCTTCACTG
AAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16427.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis