Browse Element(s) Details


OsAffx.16463.2.S1_at

Description tigr:9631.m00712
TID=OsAffx.16463.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0776011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g07720OsAffx.3168.1.S1_at9/113+3897711..3903651hypothetical protein
LOC_Os03g07730OsAffx.12770.1.S1_at11/113+3904351..3905698hypothetical protein
LOC_Os03g07740NANA3+3914200..3914762hypothetical protein
LOC_Os03g07750Os.53989.1.S1_at11/113+3915792..3919929expressed protein
LOC_Os03g07760OsAffx.16463.2.S1_at11/113+3921220..3922075hypothetical protein
LOC_Os03g07770NANA3+3923909..3930063transposon protein, putative, unclassified
LOC_Os03g07780NANA3+3930706..3933929transposon protein, putative, unclassified
LOC_Os03g07790Os.18122.1.S1_at11/113+3940152..3945416Zinc finger, C3HC4 type family protein, expressed
LOC_Os03g07790Os.16379.1.S1_at1/113+3940152..3945416Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16463.2.S1_at--913--7311Chr03:3922015..3922039 (25 bp)
GTGCATGTGCAATGTGAAGGCGACA
LOC_Os03g07760
OsAffx.16463.2.S1_at--763--7351Chr03:3922002..3922026 (25 bp)
GTGAAGGCGACAAGGTGGATCTCAT
LOC_Os03g07760
OsAffx.16463.2.S1_at--1063--831Chr03:3921979..3922003 (25 bp)
ATGGAGCAGCGAAGCCCATGGACGT
LOC_Os03g07760
OsAffx.16463.2.S1_at--187--1671Chr03:3921967..3921991 (25 bp)
AGCCCATGGACGTCGATACTTCAAA
LOC_Os03g07760
OsAffx.16463.2.S1_at--476--3651Chr03:3921949..3921973 (25 bp)
CTTCAAATGTCGCAGCACATGGGTG
LOC_Os03g07760
OsAffx.16463.2.S1_at--1049--1491Chr03:3921936..3921960 (25 bp)
AGCACATGGGTGAGTTGGGCTCTAT
LOC_Os03g07760
OsAffx.16463.2.S1_at--278--10831Chr03:3921922..3921946 (25 bp)
TTGGGCTCTATTGGGCTAGAGACCC
LOC_Os03g07760
OsAffx.16463.2.S1_at--1026--211Chr03:3921881..3921905 (25 bp)
ATTTGGCAAGAGGTGTGGCTCTATT
LOC_Os03g07760
OsAffx.16463.2.S1_at--969--7531Chr03:3921867..3921891 (25 bp)
GTGGCTCTATTAGGCTAGAGACCCC
LOC_Os03g07760
OsAffx.16463.2.S1_at--308--9551Chr03:3921505..3921854 (25 bp)
TCTATTGGGCAAGAGGTTCGAGGTT
LOC_Os03g07760
OsAffx.16463.2.S1_at--622--2811Chr03:3921300..3921324 (25 bp)
AAGATCAAGGATGCGAGCTGCCGCC
LOC_Os03g07760
Target Sequence 
GTGCATGTGCAATGTGAAGGCGACAAGGTGGATCTCATGGAGCAGCGAAGCCCATGGACGTCGATACTTCAAATGTCGCA
GCACATGGGTGAGTTGGGCTCTATTGGGCTAGAGACCCCAAGAGGTGTGGCTCTATTTGGCAAGAGGTGTGGCTCTATTA
GGCTAGAGACCCCAGGAGGTGTGGCTCTATTGGGCAAGAGGTTCGAGGTTGGGTTCATTGATCTTGACTACAACGCGCTC
GATTCAGGTGGACCGATGCAGTTCTTGCTTGAGGAGATGTGCCATGGCAATGTCGACAATGCTGGTGCATCTGGCATTCA
GGGAGTTGCTAGAATTTCGAAGCTTGATGTCACATATAACACAATGATTGATCTTTACGGGAAGGCCAGGAAGATCAAGG
ATGCGAGCTGCCGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16463.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis