Browse Element(s) Details


OsAffx.16553.1.S1_at

Description tigr:9635.m03395
TID=OsAffx.16553.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3439011/11ankyrin repeat family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34360OsAffx.28742.1.S1_at11/117+20588380..20589410hypothetical protein
LOC_Os07g34370OsAffx.28739.1.S1_at11/117+20595058..20598510hypothetical protein
LOC_Os07g34370OsAffx.28739.2.S1_at1/117+20595058..20598510hypothetical protein
LOC_Os07g34380OsAffx.28743.1.S1_at10/117+20600967..20602349hypothetical protein
LOC_Os07g34390OsAffx.16553.1.S1_at11/117+20614020..20618903ankyrin repeat family protein, putative, expressed
LOC_Os07g34400OsAffx.16554.1.S1_at11/117+20623397..20624993lipase class 3 family protein, putative
LOC_Os07g34410Os.53892.1.S1_at11/117+20639805..20644204retrotransposon protein, putative, Ty1-copia subclass, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008219biological_processcell death
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0016020cellular_componentmembrane
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16553.1.S1_at--590--1191Chr07:20616998..20617022 (25 bp)
AGTAGTTGGTTCTGTGCTGATCTCC
LOC_Os07g34390
OsAffx.16553.1.S1_at--379--1171Chr07:20617025..20617049 (25 bp)
AGTCACATTCGCAGCAGTGTTCACT
LOC_Os07g34390
OsAffx.16553.1.S1_at--284--3831Chr07:20617050..20617074 (25 bp)
CTGCCTGGCGGTTACATATCTGATG
LOC_Os07g34390
OsAffx.16553.1.S1_at--962--8871Chr07:20617070..20617094 (25 bp)
TGATGGTCATCCACATGCCGGTGCA
LOC_Os07g34390
OsAffx.16553.1.S1_at--749--8231Chr07:20617136..20617160 (25 bp)
GGCAAACACCCTTGCATTTGTGGGA
LOC_Os07g34390
OsAffx.16553.1.S1_at--421--211Chr07:20617176..20617200 (25 bp)
ATTTGGCTCACTTATGCTGGTTCAG
LOC_Os07g34390
OsAffx.16553.1.S1_at--893--9871Chr07:20617230..20617254 (25 bp)
TACATGTTCTTCTCAGTGATTTCGA
LOC_Os07g34390
OsAffx.16553.1.S1_at--676--8351Chr07:20617280..20617304 (25 bp)
GGCGGCATTCGCACTGGGAGCATAT
LOC_Os07g34390
OsAffx.16553.1.S1_at--409--5931Chr07:20617297..20617321 (25 bp)
GAGCATATGTTGTTCTGAGCCCGGT
LOC_Os07g34390
OsAffx.16553.1.S1_at--135--8511Chr07:20618698..20618722 (25 bp)
TGGCACTCAAGCTCAAGTCGATCAC
LOC_Os07g34390
OsAffx.16553.1.S1_at--109--7111Chr07:20618757..20618781 (25 bp)
GTCACCGTCAATGCTCGAGTTCTTC
LOC_Os07g34390
Target Sequence 
AGTAGTTGGTTCTGTGCTGATCTCCACAGTCACATTCGCAGCAGTGTTCACTCTGCCTGGCGGTTACATATCTGATGGTC
ATCCACATGCCGGTGCACCGATTTTATGGCACAGATATACCTTCAAGGCATTTGTGATGGCAAACACCCTTGCATTTGTG
GGATCCACGCTGTCCACCATTTGGCTCACTTATGCTGGTTCAGAGCATGTCCACCCACTGCTCCGGGCACTCTACATGTT
CTTCTCAGTGATTTCGATGGAGCAGGCGACGAGAAGCATGGTGGCGGCATTCGCACTGGGAGCATATGTTGTTCTGAGCC
CGGTCAGCGAGCGGATCGCCCTTGTGCTGTATCTCCTGGCACTCAAGCTCAAGTCGATCACCGTCGGGCTTCCACCATTG
CTTCAGACCGTGCCCGTCACCGTCAATGCTCGAGTTCTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16553.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis