Browse Element(s) Details


OsAffx.28739.1.S1_at

Description tigr:9635.m03393
TID=OsAffx.28739.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3437011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34340OsAffx.28741.1.S1_at11/117+20582492..20585296hypothetical protein
LOC_Os07g34350NANA7+20586355..20587018hypothetical protein
LOC_Os07g34360OsAffx.28742.1.S1_at11/117+20588380..20589410hypothetical protein
LOC_Os07g34370OsAffx.28739.1.S1_at11/117+20595058..20598510hypothetical protein
LOC_Os07g34370OsAffx.28739.2.S1_at1/117+20595058..20598510hypothetical protein
LOC_Os07g34380OsAffx.28743.1.S1_at10/117+20600967..20602349hypothetical protein
LOC_Os07g34390OsAffx.16553.1.S1_at11/117+20614020..20618903ankyrin repeat family protein, putative, expressed
LOC_Os07g34400OsAffx.16554.1.S1_at11/117+20623397..20624993lipase class 3 family protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28739.1.S1_at--515--2891Chr07:20595510..20595534 (25 bp)
AAGGTGGACACGCTCTGGCCATTCG
LOC_Os07g34370
OsAffx.28739.1.S1_at--1052--9451Chr07:20595497..20595521 (25 bp)
TCTGGCCATTCGTGACGCTTGTGGA
LOC_Os07g34370
OsAffx.28739.1.S1_at--281--8051Chr07:20595380..20595404 (25 bp)
GGAGTTGCACGAGCACTTCTACTCT
LOC_Os07g34370
OsAffx.28739.1.S1_at--300--9891Chr07:20595361..20595385 (25 bp)
TACTCTCCGTTGCACGCAAGCAATG
LOC_Os07g34370
OsAffx.28739.1.S1_at--509--7571Chr07:20595317..20595341 (25 bp)
GGGCGCAACTGATTTGTCTTCGTCC
LOC_Os07g34370
OsAffx.28739.1.S1_at--884--91Chr07:20595285..20595309 (25 bp)
ATTCTGTTAAGCGTGCCATCTAGGC
LOC_Os07g34370
OsAffx.28739.1.S1_at--202--451Chr07:20595268..20595292 (25 bp)
ATCTAGGCCGTACCTTGCTGCGTTT
LOC_Os07g34370
OsAffx.28739.1.S1_at--183--3811Chr07:20595251..20595275 (25 bp)
CTGCGTTTCGTGATGAGCCGGACAA
LOC_Os07g34370
OsAffx.28739.1.S1_at--284--5391Chr07:20595149..20595173 (25 bp)
GAAGCTTCGGGTTAATTTCGGCAAG
LOC_Os07g34370
OsAffx.28739.1.S1_at--905--2651Chr07:20595120..20595144 (25 bp)
AAGCCTGATAACTGGAGGGCCTCCA
LOC_Os07g34370
OsAffx.28739.1.S1_at--279--2752Chr07:20485617..20485639 (23 bp)
AAGAACCCACTGCTGTCAGCATCAG
NONE
Target Sequence 
AAGGTGGACACGCTCTGGCCATTCGTGACGCTTGTGGAGTCGGAGGGCGAGGACCACGGCTTCCACCTCTACAGCCCTCT
CCGCGGTCCGCGCAGACAAGCAGGACGCTCATGGAGAGCATCGTGCTGCCGGAGTTGCACGAGCACTTCTACTCTCCGTT
GCACGCAAGCAATGGCGATCAGAAGATGTCAAGGGGCGCAACTGATTTGTCTTCGTCCCGGCCGCATTCTGTTAAGCGTG
CCATCTAGGCCGTACCTTGCTGCGTTTCGTGATGAGCCGGACAAGGTGATAGCTCGAAGTGGCAAGAGATGCATGGAGAT
TAACAATGCATTAATAGTTGGACAGGAGAAAGCATCAAGGAGAAGCTTCGGGTTAATTTCGGCAAGGGCCAAGCCTGATA
ACTGGAGGGCCTCCAAGAACCCACTGCTGTCAGCATCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28739.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis