Browse Element(s) Details


OsAffx.28743.1.S1_at

Description tigr:9635.m03394
TID=OsAffx.28743.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3438010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34340OsAffx.28741.1.S1_at11/117+20582492..20585296hypothetical protein
LOC_Os07g34350NANA7+20586355..20587018hypothetical protein
LOC_Os07g34360OsAffx.28742.1.S1_at11/117+20588380..20589410hypothetical protein
LOC_Os07g34370OsAffx.28739.1.S1_at11/117+20595058..20598510hypothetical protein
LOC_Os07g34370OsAffx.28739.2.S1_at1/117+20595058..20598510hypothetical protein
LOC_Os07g34380OsAffx.28743.1.S1_at10/117+20600967..20602349hypothetical protein
LOC_Os07g34390OsAffx.16553.1.S1_at11/117+20614020..20618903ankyrin repeat family protein, putative, expressed
LOC_Os07g34400OsAffx.16554.1.S1_at11/117+20623397..20624993lipase class 3 family protein, putative

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28743.1.S1_at--1147--991NONE
AGGTTGCCCCGTGCAAGGATGAGGA
NONE
OsAffx.28743.1.S1_at--182--5511Chr07:20601228..20601252 (25 bp)
GAACAACTTCGCTTCTAGGGTATCA
LOC_Os07g34380
OsAffx.28743.1.S1_at--801--2511Chr07:20601224..20601248 (25 bp)
AACTTCGCTTCTAGGGTATCAGAGA
LOC_Os07g34380
OsAffx.28743.1.S1_at--92--9351Chr07:20601220..20601244 (25 bp)
TCGCTTCTAGGGTATCAGAGATAAA
LOC_Os07g34380
OsAffx.28743.1.S1_at--456--1171Chr07:20601186..20601210 (25 bp)
AGTACATAAAACGTGGCTCCAGCCT
LOC_Os07g34380
OsAffx.28743.1.S1_at--488--9811Chr07:20601180..20601204 (25 bp)
TAAAACGTGGCTCCAGCCTAGAAAA
LOC_Os07g34380
OsAffx.28743.1.S1_at--756--4351Chr07:20601132..20601156 (25 bp)
CCAGAGTGCTGGACCGGTGGACCCA
LOC_Os07g34380
OsAffx.28743.1.S1_at--451--1131Chr07:20601128..20601152 (25 bp)
AGTGCTGGACCGGTGGACCCAAGTC
LOC_Os07g34380
OsAffx.28743.1.S1_at--194--7571Chr07:20601090..20601114 (25 bp)
GGGCCCCAGGCTGTGGCTTGGTGAC
LOC_Os07g34380
OsAffx.28743.1.S1_at--597--7591Chr07:20601047..20601071 (25 bp)
GGGACTATAGTCAAGCAGGAACCTG
LOC_Os07g34380
OsAffx.28743.1.S1_at--582--4291Chr07:20600997..20601021 (25 bp)
CCTCGATTCGCATGCTAGGGCAGCA
LOC_Os07g34380
Target Sequence 
AGGTTGCCCCGTGCAAGGATGAGGAGAAGAACAACTTCGCTTCTAGGGTATCAGAGATAAAGACATACGAAGTACATAAA
ACGTGGCTCCAGCCTAGAAAAAAAAAAGAAAAAAAAACGTGGCTCCAGAGTGCTGGACCGGTGGACCCAAGTCCCCCAAC
TGTGGCGGGCCCCAGGCTGTGGCTTGGTGACTGCGACGGCGGTGGCAGTGGGACTATAGTCAAGCAGGAACCTGAACCAC
GACCCCTCTCCTACCTCCGCCTCGATTCGCATGCTAGGGCAGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28743.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis