Browse Element(s) Details


OsAffx.28741.1.S1_at

Description tigr:9635.m03390
TID=OsAffx.28741.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3434011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34320OsAffx.5526.1.S1_at11/117+20560788..20565965Integral membrane protein DUF6 containing protein, expressed
LOC_Os07g34330NANA7+20569585..20569866hypothetical protein
LOC_Os07g34340OsAffx.28741.1.S1_at11/117+20582492..20585296hypothetical protein
LOC_Os07g34350NANA7+20586355..20587018hypothetical protein
LOC_Os07g34360OsAffx.28742.1.S1_at11/117+20588380..20589410hypothetical protein
LOC_Os07g34370OsAffx.28739.1.S1_at11/117+20595058..20598510hypothetical protein
LOC_Os07g34370OsAffx.28739.2.S1_at1/117+20595058..20598510hypothetical protein
LOC_Os07g34380OsAffx.28743.1.S1_at10/117+20600967..20602349hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28741.1.S1_at--159--10511Chr07:20584030..20584054 (25 bp)
TTCAGCAACTTCATCATCAGCATTG
LOC_Os07g34340
OsAffx.28741.1.S1_at--443--2691Chr07:20584634..20584658 (25 bp)
AAGCTGATGAACACCACGATACAGA
LOC_Os07g34340
OsAffx.28741.1.S1_at--492--6471Chr07:20584651..20584675 (25 bp)
GATACAGATCTCATTCGCGTCAGTC
LOC_Os07g34340
OsAffx.28741.1.S1_at--273--4631Chr07:20584667..20584691 (25 bp)
GCGTCAGTCCAAGCCTTTGTTGTGG
LOC_Os07g34340
OsAffx.28741.1.S1_at--514--8351Chr07:20584730..20584754 (25 bp)
GGCTGGAATTTTGGCCTTGCTGCAA
LOC_Os07g34340
OsAffx.28741.1.S1_at--838--8431Chr07:20584742..20584766 (25 bp)
GGCCTTGCTGCAATAATCTACAATG
LOC_Os07g34340
OsAffx.28741.1.S1_at--640--2231Chr07:20584761..20584894 (25 bp)
ACAATGGTGTGATTGTCACTGCACT
LOC_Os07g34340
OsAffx.28741.1.S1_at--929--8731Chr07:20584883..20584907 (25 bp)
TGTCACTGCACTTTCATACTACATG
LOC_Os07g34340
OsAffx.28741.1.S1_at--927--4451Chr07:20585017..20585151 (25 bp)
GCCTAGGGAGTATTGTTGCTGGAAT
LOC_Os07g34340
OsAffx.28741.1.S1_at--71--8191Chr07:20585147..20585171 (25 bp)
GGAATACTACTAATTGGAGGCTTAT
LOC_Os07g34340
OsAffx.28741.1.S1_at--801--10071Chr07:20585223..20585247 (25 bp)
TAGGTCCAGCTATACCTGACTTGGA
LOC_Os07g34340
Target Sequence 
TTCAGCAACTTCATCATCAGCATTGTACAATGTTCAACCAGTGGTTGGAGTCTATGAAACTGAAGAGATTCCATGGACAT
GCTTATGGAATGTGTTCCAGGGGCCGTTGATAGAAGACACTTCCAAGCTGATGAACACCACGATACAGATCTCATTCGCG
TCAGTCCAAGCCTTTGTTGTGGCTGTTGCAGCCGAGAGGGACTTCTCCAAGTGGAAGCTTGGCTGGAATTTTGGCCTTGC
TGCAATAATCTACAATGGTGTGATTGTCACTGCACTTTCATACTACATGCAAATATGGACGATCGCGAAGAGGGGGCCAG
TGTTCCTTGCCATGTCGATGCCACTTACTTTGATATTCACAATCATCATATCCTCATTCATTTTAGGAGAAGCAGTTAGC
CTAGGGAGTATTGTTGCTGGAATACTACTAATTGGAGGCTTATTTAATGTTCTGTGGGGTAAAAACTTAGAGGAACATGA
TGAACTGAACAAGATAGGTCCAGCTATACCTGACTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28741.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis