Browse Element(s) Details


OsAffx.16554.1.S1_at

Description tigr:9635.m03396
TID=OsAffx.16554.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3440011/11lipase class 3 family protein, putative
LOC_Os06g043901/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34370OsAffx.28739.1.S1_at11/117+20595058..20598510hypothetical protein
LOC_Os07g34370OsAffx.28739.2.S1_at1/117+20595058..20598510hypothetical protein
LOC_Os07g34380OsAffx.28743.1.S1_at10/117+20600967..20602349hypothetical protein
LOC_Os07g34390OsAffx.16553.1.S1_at11/117+20614020..20618903ankyrin repeat family protein, putative, expressed
LOC_Os07g34400OsAffx.16554.1.S1_at11/117+20623397..20624993lipase class 3 family protein, putative
LOC_Os07g34410Os.53892.1.S1_at11/117+20639805..20644204retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g34420OsAffx.28745.1.S1_at11/117+20645291..20645911lipase class 3 family protein, putative
LOC_Os07g34430NANA7+20648608..20649326hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16554.1.S1_at--480--911Chr07:20623978..20624002 (25 bp)
AGGCTCTAGATGTCGGGCGGTCCAT
LOC_Os07g34400
OsAffx.16554.1.S1_at--280--871Chr07:20623955..20623979 (25 bp)
ATGGCCGAGAAAGGCTTCAACCTCC
LOC_Os07g34400
OsAffx.16554.1.S1_at--401--3051Chr07:20623887..20623911 (25 bp)
AATCTACTTGCTGCGCCCGAATGAG
LOC_Os07g34400
OsAffx.16554.1.S1_at--923--2791Chr07:20623856..20623880 (25 bp)
AAGATGCATCTATACGCCACGAGCT
LOC_Os07g34400
OsAffx.16554.1.S1_at--572--4471Chr07:20623816..20623840 (25 bp)
GCCTGAGCAAGATCGTGAAGTCCCA
LOC_Os07g34400
OsAffx.16554.1.S1_at--872--2511Chr07:20623737..20623761 (25 bp)
AACTATATGTGCACGACAGCGACCC
LOC_Os07g34400
OsAffx.16554.1.S1_at--523--5972Chr07:20623617..20623641 (25 bp)
GAGACATGTTCTTCTCAGCGCTCAA
LOC_Os07g34400
OsAffx.16554.1.S1_at--1070--8931Chr07:20623526..20623550 (25 bp)
TGACGTGGAGAATCACCCGTCCAAG
LOC_Os07g34400
OsAffx.16554.1.S1_at--666--9211Chr07:20623507..20623531 (25 bp)
TCCAAGTGTACGCTGCTCCGCAAAG
LOC_Os07g34400
OsAffx.16554.1.S1_at--667--9291Chr07:20623491..20623515 (25 bp)
TCCGCAAAGCGAACCGTCTCAAGAA
LOC_Os07g34400
OsAffx.16554.1.S1_at--240--2751Chr07:20623471..20623495 (25 bp)
AAGAAGCGGGTCCTCAAGGCGCATA
LOC_Os07g34400
Target Sequence 
AGGCTCTAGATGTCGGGCGGTCCATGGCCGAGAAAGGCTTCAACCTCCCCACCTTTCTGTTCAACCCGCCGCAAGTGTCG
CCAGCGCCGGCAATCTACTTGCTGCGCCCGAATGAGAAGGCCAAGATGCATCTATACGCCACGAGCTCCCTCCTCAAGGT
AGGCCTGAGCAAGATCGTGAAGTCCCACGAGGAGCACATGGAAGACCTGTTCAAACAACTATATGTGCACGACAGCGACC
CCATCTGCCAGGGCTACGTCGACTACTTCGAGCAGAGGCAACTGGTGCAGGAACGCTTCCCTAGCATCGGCATGTCGGCG
ATGAAGCTGTCGTACCGAGACATGTTCTTCTCAGCGCTCAACAAAGACAAGGAGCGGTCGCACCTCCTGCCGTCGGCACT
GCTGTGGGAGAACTCGAGGATGGACAATGACGTGGAGAATCACCCGTCCAAGTGTACGCTGCTCCGCAAAGCGAACCGTC
TCAAGAAGCGGGTCCTCAAGGCGCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16554.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis