Browse Element(s) Details


OsAffx.16560.1.S1_at

Description tigr:9635.m03443
TID=OsAffx.16560.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3484011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g34800Os.28943.1.S1_x_at1/117+20853335..20856642retrotransposon protein, putative, unclassified
LOC_Os07g34810NANA7+20857259..20863414transposon protein, putative, unclassified
LOC_Os07g34820OsAffx.5529.1.S1_at11/117+20865385..20866152transient receptor potential cation channel, subfamily N, member 1, putative
LOC_Os07g34830Os.51015.1.S1_at11/117+20872577..20875029ankyrin repeat family protein, putative, expressed
LOC_Os07g34840OsAffx.16560.1.S1_at11/117+20879505..20880374hypothetical protein
LOC_Os07g34840OsAffx.9743.2.S1_x_at1/117+20879505..20880374hypothetical protein
LOC_Os07g34850OsAffx.16561.1.S1_at11/117+20882956..20884266Eukaryotic aspartyl protease family protein, expressed
LOC_Os07g34860OsAffx.19542.3.S1_x_at7/117+20889387..20893609retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g34870NANA7+20898695..20900050Eukaryotic aspartyl protease family protein
LOC_Os07g34880NANA7+20902519..20904138Homeobox domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16560.1.S1_at--642--7271Chr07:20879807..20879831 (25 bp)
GTCCAAAACACATCTGACCGGGTTG
LOC_Os07g34840
OsAffx.16560.1.S1_at--888--471Chr07:20879818..20879842 (25 bp)
ATCTGACCGGGTTGATTGCCTTGCG
LOC_Os07g34840
OsAffx.16560.1.S1_at--574--10691Chr07:20879838..20879862 (25 bp)
TTGCGTGGCGGTCCAACTTGGCAAC
LOC_Os07g34840
OsAffx.16560.1.S1_at--254--3591Chr07:20879885..20879909 (25 bp)
CATTTTACTTTCCTCGCGTATCCTA
LOC_Os07g34840
OsAffx.16560.1.S1_at--858--1911Chr07:20879942..20879966 (25 bp)
ACGGTGGCTACTGCCAAGGCGCCGT
LOC_Os07g34840
OsAffx.16560.1.S1_at--634--891Chr07:20879958..20879982 (25 bp)
AGGCGCCGTTGCGATCACGACCGTG
LOC_Os07g34840
OsAffx.16560.1.S1_at--867--9332Chr07:20880007..20880031 (25 bp)
TCGCCGTCGAGTACAACGTCGCGCA
LOC_Os07g34840
OsAffx.16560.1.S1_at--89--2211Chr07:20880097..20880121 (25 bp)
ACAACGTGTTCTGTTGGGCGTGCCT
LOC_Os07g34840
OsAffx.16560.1.S1_at--762--2951Chr07:20880132..20880156 (25 bp)
AAGGCCGTGCCTTGGCTGCTATGCT
LOC_Os07g34840
OsAffx.16560.1.S1_at--237--3571Chr07:20880179..20880203 (25 bp)
CATACAGGATAATGCCGTGGCGTCG
LOC_Os07g34840
OsAffx.16560.1.S1_at--125--8471Chr07:20880304..20880328 (25 bp)
TGGCGCAGCATAACGTAGCGGCCAT
LOC_Os07g34840
Target Sequence 
GTCCAAAACACATCTGACCGGGTTGATTGCCTTGCGTGGCGGTCCAACTTGGCAACATATTTGCATTTTGGCCCCCCGCA
TTTTACTTTCCTCGCGTATCCTACCCCCTTCTTCCCCAAATCTTCTTCTCTACCCACGGTGGCTACTGCCAAGGCGCCGT
TGCGATCACGACCGTGTCGTTCGGCACGGCCGCCGCACGCTCGCCGTCGAGTACAACGTCGCGCAGCTCTCCAGGGGGTC
GACGGAGGAGTGGAGGAAGGTGACATCGGAGGCACGGAAGTTGTCGAAGCACAACGTGTTCTGTTGGGCGTGCCTCGTGG
ACGACAAGGCCGTGCCTTGGCTGCTATGCTTCCTCTCCTCCACCACCGCCGCCATACAGGATAATGCCGTGGCGTCGCTG
CTCAACCTCTTGAAGCACCCCGCCGGGCAGATGACCATCATGGAGGTCGGAGGCGTCGGCCTCGTTGTCGACGTGATCAA
CGTCGTTGCCAAGGCCGTGGCGCAGCATAACGTAGCGGCCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16560.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis